miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28130 3' -60.4 NC_005887.1 + 5434 0.66 0.368137
Target:  5'- -cGGCGCGaccacgccgCCCgcuggcacuccUGCCGCAuccaccacgacGCAGGCCg -3'
miRNA:   3'- gcUCGCGCa--------GGG-----------ACGGCGU-----------CGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 37843 0.67 0.30403
Target:  5'- -uGGUGUGauugCCC-GCCGUAGCGGGCg -3'
miRNA:   3'- gcUCGCGCa---GGGaCGGCGUCGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 25917 0.67 0.307022
Target:  5'- aCGAGCGUGagCUUGCCGUcgcGCAccagauuuagacgguGGCCc -3'
miRNA:   3'- -GCUCGCGCagGGACGGCGu--CGU---------------UCGG- -5'
28130 3' -60.4 NC_005887.1 + 41577 0.67 0.311553
Target:  5'- cCGAGa-CGUUCCUGUCGgcCAGCGgcGGCCc -3'
miRNA:   3'- -GCUCgcGCAGGGACGGC--GUCGU--UCGG- -5'
28130 3' -60.4 NC_005887.1 + 15846 0.67 0.323881
Target:  5'- -cGGCGCGaucgagggaaacgCCC-GCgCGCAGCAGGCg -3'
miRNA:   3'- gcUCGCGCa------------GGGaCG-GCGUCGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 24419 0.67 0.334964
Target:  5'- aCGAGCuCGUUCgUG-CGCAcGCAGGUCg -3'
miRNA:   3'- -GCUCGcGCAGGgACgGCGU-CGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 34395 0.67 0.334964
Target:  5'- cCGGGCGCGaggCCCgGCCugcaauCAGuCGAGCUc -3'
miRNA:   3'- -GCUCGCGCa--GGGaCGGc-----GUC-GUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 21667 0.66 0.350444
Target:  5'- aCGGGCGUGUCgCUgacgucgggggcaGCUGCAaacgguGCGAGCg -3'
miRNA:   3'- -GCUCGCGCAGgGA-------------CGGCGU------CGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 33918 0.66 0.368137
Target:  5'- gGAGUgaagccuucGCGUCgaCCUGCCGacggcgcuCGGCGAGCa -3'
miRNA:   3'- gCUCG---------CGCAG--GGACGGC--------GUCGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 33268 0.68 0.282303
Target:  5'- --cGCGaaacuuCGUCCC-GCCGCAGCcGGCg -3'
miRNA:   3'- gcuCGC------GCAGGGaCGGCGUCGuUCGg -5'
28130 3' -60.4 NC_005887.1 + 29743 0.68 0.282303
Target:  5'- --cGCGCGUgcacggUCUUGCC-CGGCGAGCUg -3'
miRNA:   3'- gcuCGCGCA------GGGACGGcGUCGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 25040 0.68 0.275339
Target:  5'- gGuAGCGCagaaCCCaUGCCGCAGUGccgcuGGCCg -3'
miRNA:   3'- gC-UCGCGca--GGG-ACGGCGUCGU-----UCGG- -5'
28130 3' -60.4 NC_005887.1 + 30997 0.74 0.099496
Target:  5'- gGGGUGCGUCUCUcGCguggCGCGGCGcaGGCCa -3'
miRNA:   3'- gCUCGCGCAGGGA-CG----GCGUCGU--UCGG- -5'
28130 3' -60.4 NC_005887.1 + 41291 0.72 0.13877
Target:  5'- aCGGGCGCGcUgCUGCCGCcgGGCAAGg- -3'
miRNA:   3'- -GCUCGCGCaGgGACGGCG--UCGUUCgg -5'
28130 3' -60.4 NC_005887.1 + 5491 0.72 0.159009
Target:  5'- -uGGCGCagcaCCgGCCGCAGCAccGGCCg -3'
miRNA:   3'- gcUCGCGcag-GGaCGGCGUCGU--UCGG- -5'
28130 3' -60.4 NC_005887.1 + 31122 0.71 0.163365
Target:  5'- aGAGCaggGCGagCUUGCCG-GGCAGGCCg -3'
miRNA:   3'- gCUCG---CGCagGGACGGCgUCGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 40359 0.71 0.163365
Target:  5'- uCGAGCGCGgCCgUGCCGCucgucGCGcGCg -3'
miRNA:   3'- -GCUCGCGCaGGgACGGCGu----CGUuCGg -5'
28130 3' -60.4 NC_005887.1 + 26842 0.7 0.207606
Target:  5'- gCGGGCGCGUC--UGCCGgUAGCcguuGCCg -3'
miRNA:   3'- -GCUCGCGCAGggACGGC-GUCGuu--CGG- -5'
28130 3' -60.4 NC_005887.1 + 13554 0.69 0.230401
Target:  5'- -cGGCGaugCgCUGCCGCccgAGCAGGCCg -3'
miRNA:   3'- gcUCGCgcaGgGACGGCG---UCGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 37443 0.68 0.261824
Target:  5'- gGAGCGCGgCgCUUGCCugcgcgguuuGCAGUgcGCCg -3'
miRNA:   3'- gCUCGCGCaG-GGACGG----------CGUCGuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.