miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28130 3' -60.4 NC_005887.1 + 24419 0.67 0.334964
Target:  5'- aCGAGCuCGUUCgUG-CGCAcGCAGGUCg -3'
miRNA:   3'- -GCUCGcGCAGGgACgGCGU-CGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 8655 0.67 0.32702
Target:  5'- aGAGCucgccaGCGUCgaacgaaaCCUGCUGCGGUgcuGCCu -3'
miRNA:   3'- gCUCG------CGCAG--------GGACGGCGUCGuu-CGG- -5'
28130 3' -60.4 NC_005887.1 + 22219 0.67 0.32702
Target:  5'- --uGCGCGUcagCCCUucgccgaugaaGCCGagcgcgauCAGCGAGCCa -3'
miRNA:   3'- gcuCGCGCA---GGGA-----------CGGC--------GUCGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 13687 0.67 0.32702
Target:  5'- uGAGUGCGgccgCCgcgcgccgcgCUGCCaGCAGCGaugaaguacgcGGCCu -3'
miRNA:   3'- gCUCGCGCa---GG----------GACGG-CGUCGU-----------UCGG- -5'
28130 3' -60.4 NC_005887.1 + 15846 0.67 0.323881
Target:  5'- -cGGCGCGaucgagggaaacgCCC-GCgCGCAGCAGGCg -3'
miRNA:   3'- gcUCGCGCa------------GGGaCG-GCGUCGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 41673 0.67 0.319216
Target:  5'- aCGGGcCGCG-CCg-GCCGCcGCAccugGGCCg -3'
miRNA:   3'- -GCUC-GCGCaGGgaCGGCGuCGU----UCGG- -5'
28130 3' -60.4 NC_005887.1 + 1574 0.67 0.319216
Target:  5'- cCGGGUacGUGUUCCgcacgGCCGCGccgcGCGAGCg -3'
miRNA:   3'- -GCUCG--CGCAGGGa----CGGCGU----CGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 24050 0.67 0.319216
Target:  5'- cCGAGCGcCGcCUCgcGCUcgaGCAGUggGCCg -3'
miRNA:   3'- -GCUCGC-GCaGGGa-CGG---CGUCGuuCGG- -5'
28130 3' -60.4 NC_005887.1 + 41577 0.67 0.311553
Target:  5'- cCGAGa-CGUUCCUGUCGgcCAGCGgcGGCCc -3'
miRNA:   3'- -GCUCgcGCAGGGACGGC--GUCGU--UCGG- -5'
28130 3' -60.4 NC_005887.1 + 25917 0.67 0.307022
Target:  5'- aCGAGCGUGagCUUGCCGUcgcGCAccagauuuagacgguGGCCc -3'
miRNA:   3'- -GCUCGCGCagGGACGGCGu--CGU---------------UCGG- -5'
28130 3' -60.4 NC_005887.1 + 37843 0.67 0.30403
Target:  5'- -uGGUGUGauugCCC-GCCGUAGCGGGCg -3'
miRNA:   3'- gcUCGCGCa---GGGaCGGCGUCGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 5495 0.67 0.30403
Target:  5'- gCGGGCGCGUggucgCgCCgGUCGCuGCGGcGCCg -3'
miRNA:   3'- -GCUCGCGCA-----G-GGaCGGCGuCGUU-CGG- -5'
28130 3' -60.4 NC_005887.1 + 32124 0.67 0.30403
Target:  5'- uGGGUGUGUCCCguuuCCGUcuGCGGGCg -3'
miRNA:   3'- gCUCGCGCAGGGac--GGCGu-CGUUCGg -5'
28130 3' -60.4 NC_005887.1 + 29743 0.68 0.282303
Target:  5'- --cGCGCGUgcacggUCUUGCC-CGGCGAGCUg -3'
miRNA:   3'- gcuCGCGCA------GGGACGGcGUCGUUCGG- -5'
28130 3' -60.4 NC_005887.1 + 33268 0.68 0.282303
Target:  5'- --cGCGaaacuuCGUCCC-GCCGCAGCcGGCg -3'
miRNA:   3'- gcuCGC------GCAGGGaCGGCGUCGuUCGg -5'
28130 3' -60.4 NC_005887.1 + 25040 0.68 0.275339
Target:  5'- gGuAGCGCagaaCCCaUGCCGCAGUGccgcuGGCCg -3'
miRNA:   3'- gC-UCGCGca--GGG-ACGGCGUCGU-----UCGG- -5'
28130 3' -60.4 NC_005887.1 + 19499 0.68 0.267838
Target:  5'- aCGAGCcCGUUCC-GCCuuuuucgGCAGCGuGCCg -3'
miRNA:   3'- -GCUCGcGCAGGGaCGG-------CGUCGUuCGG- -5'
28130 3' -60.4 NC_005887.1 + 37443 0.68 0.261824
Target:  5'- gGAGCGCGgCgCUUGCCugcgcgguuuGCAGUgcGCCg -3'
miRNA:   3'- gCUCGCGCaG-GGACGG----------CGUCGuuCGG- -5'
28130 3' -60.4 NC_005887.1 + 33933 0.68 0.261824
Target:  5'- gGAGCGCuGUCggCUGCCGCAGgCucguacGCCc -3'
miRNA:   3'- gCUCGCG-CAGg-GACGGCGUC-Guu----CGG- -5'
28130 3' -60.4 NC_005887.1 + 34420 0.68 0.261824
Target:  5'- gGGGCGCucGUCuCCaGCCGUGGCcGGCg -3'
miRNA:   3'- gCUCGCG--CAG-GGaCGGCGUCGuUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.