Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28131 | 3' | -55.6 | NC_005887.1 | + | 41530 | 0.75 | 0.221503 |
Target: 5'- cGG-CAAGAUCcGCGAGG-CGCuCGGCGc -3' miRNA: 3'- -CCaGUUCUAGcUGCUCCaGCG-GCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 40707 | 0.66 | 0.643209 |
Target: 5'- uGG-CAGGAgccgaUCGAagacgacuuCGAGGUCGCCGcccGCGu -3' miRNA: 3'- -CCaGUUCU-----AGCU---------GCUCCAGCGGC---CGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 36115 | 0.68 | 0.501841 |
Target: 5'- --gCGAGcgCGuCGAGGccuugcgccUCGCCGGCGc -3' miRNA: 3'- ccaGUUCuaGCuGCUCC---------AGCGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 35050 | 0.66 | 0.643209 |
Target: 5'- gGGUuacgCGAGGUCGcUGccGUCGUCGGCGg -3' miRNA: 3'- -CCA----GUUCUAGCuGCucCAGCGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 34637 | 0.73 | 0.265911 |
Target: 5'- cGUUcgcGUCGACGAGGcgCGCCGGCu -3' miRNA: 3'- cCAGuucUAGCUGCUCCa-GCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 33720 | 0.72 | 0.301108 |
Target: 5'- cGGUCGAucugcucGAUCGcgGCGAGGaucagcgCGCCGGCc -3' miRNA: 3'- -CCAGUU-------CUAGC--UGCUCCa------GCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 33076 | 0.67 | 0.587941 |
Target: 5'- cGUCAGGuugauaguUCGGauccagguaguCGGGGUCGCCcGGCu -3' miRNA: 3'- cCAGUUCu-------AGCU-----------GCUCCAGCGG-CCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 31349 | 0.75 | 0.199071 |
Target: 5'- cGGUCGAGcUCGACGAGGcgaUCGaCgCGGCc -3' miRNA: 3'- -CCAGUUCuAGCUGCUCC---AGC-G-GCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 27769 | 0.68 | 0.522924 |
Target: 5'- cGUCGAGugcuacgCGGCGAGGUa--CGGCAc -3' miRNA: 3'- cCAGUUCua-----GCUGCUCCAgcgGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 26565 | 0.67 | 0.61 |
Target: 5'- -cUCGAGGaaaUCGuCGAGGaagCgGCCGGCAu -3' miRNA: 3'- ccAGUUCU---AGCuGCUCCa--G-CGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 26220 | 0.69 | 0.481139 |
Target: 5'- --aCAcGAUCGACGAGGacgUCGUCGaGCGc -3' miRNA: 3'- ccaGUuCUAGCUGCUCC---AGCGGC-CGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 24988 | 0.67 | 0.575868 |
Target: 5'- aGGUCGGGGUaguUGcCGAGcGUCagcucgcGCCGGCGg -3' miRNA: 3'- -CCAGUUCUA---GCuGCUC-CAG-------CGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 24033 | 0.68 | 0.54434 |
Target: 5'- -cUCGAGcaGUgGGcCGAGGUCGUCGGUg -3' miRNA: 3'- ccAGUUC--UAgCU-GCUCCAGCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 23551 | 0.66 | 0.665314 |
Target: 5'- cGUCGgcaagcAGAUCaa-GGGcGUCGCCGGCu -3' miRNA: 3'- cCAGU------UCUAGcugCUC-CAGCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 21036 | 0.67 | 0.587941 |
Target: 5'- cGGUCAGgcGAUCGucuCGAcagguucGUCGUCGGCGc -3' miRNA: 3'- -CCAGUU--CUAGCu--GCUc------CAGCGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 19973 | 0.77 | 0.160101 |
Target: 5'- cGUCAGGGUCGAauaGAGGUagaCGCCGGg- -3' miRNA: 3'- cCAGUUCUAGCUg--CUCCA---GCGGCCgu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 17935 | 0.66 | 0.643209 |
Target: 5'- cGGaCAGGuuccgggcccacGUCGucGCGAGGUUGUCGGUg -3' miRNA: 3'- -CCaGUUC------------UAGC--UGCUCCAGCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 17648 | 0.66 | 0.676324 |
Target: 5'- --gCGGGAUUGACGGGcGUguucgucgCGCCGGUc -3' miRNA: 3'- ccaGUUCUAGCUGCUC-CA--------GCGGCCGu -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 16626 | 0.67 | 0.60779 |
Target: 5'- cGGUCGAGAUCGGCuucgugcacgaguuGcugacgcgcccacucGG-CGCCGGCGg -3' miRNA: 3'- -CCAGUUCUAGCUG--------------Cu--------------CCaGCGGCCGU- -5' |
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28131 | 3' | -55.6 | NC_005887.1 | + | 16482 | 0.67 | 0.566032 |
Target: 5'- cGG-CAGGAUcCGGCGGGcUgGUCGGCGa -3' miRNA: 3'- -CCaGUUCUA-GCUGCUCcAgCGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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