miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 40768 0.72 0.365282
Target:  5'- gCGCGCCGCGcgcCGcCGAGccgGCGGUCGa -3'
miRNA:   3'- -GCGCGGUGCua-GC-GCUUa--CGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 11562 0.75 0.271429
Target:  5'- gCGCGCgGCGGUCGCGGA----AUCGGg -3'
miRNA:   3'- -GCGCGgUGCUAGCGCUUacgcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 919 0.75 0.26455
Target:  5'- cCGCGUCGCGAcccgcaUCGCGAGUGCcccGAgugcuUCGGc -3'
miRNA:   3'- -GCGCGGUGCU------AGCGCUUACG---CU-----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 14720 0.75 0.251217
Target:  5'- gGCGCgGCGAUCGCGcagGCGAcgaUCGa -3'
miRNA:   3'- gCGCGgUGCUAGCGCuuaCGCU---AGCc -5'
28131 5' -54.5 NC_005887.1 + 30729 0.68 0.586017
Target:  5'- uCGCGCUGCGuggccuUCGCGAcuucGCcGUCGGu -3'
miRNA:   3'- -GCGCGGUGCu-----AGCGCUua--CGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 5830 0.68 0.597034
Target:  5'- gGCGCg--GGUCGCGAAggGCGAagCGGa -3'
miRNA:   3'- gCGCGgugCUAGCGCUUa-CGCUa-GCC- -5'
28131 5' -54.5 NC_005887.1 + 8299 0.68 0.608081
Target:  5'- gCGCGUCAcCGAUC-CGAAcGCGAU-GGa -3'
miRNA:   3'- -GCGCGGU-GCUAGcGCUUaCGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 27344 0.66 0.749861
Target:  5'- uGCGCCACGcgCaGCGGc-GCGcagacgagcGUCGGc -3'
miRNA:   3'- gCGCGGUGCuaG-CGCUuaCGC---------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 23187 0.66 0.73936
Target:  5'- uCGCGCuCGCGAUCaCGGccGgGggCGGc -3'
miRNA:   3'- -GCGCG-GUGCUAGcGCUuaCgCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 18380 0.66 0.72875
Target:  5'- gCGCGCCgGCGcUCGCGAAccCGAU-GGc -3'
miRNA:   3'- -GCGCGG-UGCuAGCGCUUacGCUAgCC- -5'
28131 5' -54.5 NC_005887.1 + 32457 0.66 0.72875
Target:  5'- gCGCaGCCACug-CGCGGcGUGCgGAUCGa -3'
miRNA:   3'- -GCG-CGGUGcuaGCGCU-UACG-CUAGCc -5'
28131 5' -54.5 NC_005887.1 + 17291 0.66 0.72875
Target:  5'- gGCGCCGCGcgCGCaAAcGcCGGuUCGGc -3'
miRNA:   3'- gCGCGGUGCuaGCGcUUaC-GCU-AGCC- -5'
28131 5' -54.5 NC_005887.1 + 6824 0.66 0.716966
Target:  5'- gGCGCUACGuggCGCGggUcugcaacaucgacGUG-UCGGa -3'
miRNA:   3'- gCGCGGUGCua-GCGCuuA-------------CGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 24260 0.66 0.707247
Target:  5'- aGCaGCCACGGcgagUCGcCGGAUagcGCGAUCa- -3'
miRNA:   3'- gCG-CGGUGCU----AGC-GCUUA---CGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 10603 0.66 0.696378
Target:  5'- gCGCGUCACGAacaUCGCGAcacGCuucucgCGGa -3'
miRNA:   3'- -GCGCGGUGCU---AGCGCUua-CGcua---GCC- -5'
28131 5' -54.5 NC_005887.1 + 35771 0.67 0.685446
Target:  5'- aCGCGCgGCuggugGAUCaCGAuguugAUGCGAUCGa -3'
miRNA:   3'- -GCGCGgUG-----CUAGcGCU-----UACGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 15386 0.67 0.685446
Target:  5'- uCGaCGCCGCgcuGAUCGCGc--GCGGgcagCGGa -3'
miRNA:   3'- -GC-GCGGUG---CUAGCGCuuaCGCUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 33801 0.68 0.619149
Target:  5'- gCGCGgacCCACGGccaccaCGCGggUGUcaGGUCGGc -3'
miRNA:   3'- -GCGC---GGUGCUa-----GCGCuuACG--CUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 17255 0.68 0.619149
Target:  5'- gGCGUCAauaaGAUCGUGccggGCGAgacgUCGGg -3'
miRNA:   3'- gCGCGGUg---CUAGCGCuua-CGCU----AGCC- -5'
28131 5' -54.5 NC_005887.1 + 12433 0.68 0.608081
Target:  5'- gGCGCgCGCGAUCGCGAuggaccCGAgccuguaCGGu -3'
miRNA:   3'- gCGCG-GUGCUAGCGCUuac---GCUa------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.