Results 81 - 98 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28131 | 5' | -54.5 | NC_005887.1 | + | 17291 | 0.66 | 0.72875 |
Target: 5'- gGCGCCGCGcgCGCaAAcGcCGGuUCGGc -3' miRNA: 3'- gCGCGGUGCuaGCGcUUaC-GCU-AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 32457 | 0.66 | 0.72875 |
Target: 5'- gCGCaGCCACug-CGCGGcGUGCgGAUCGa -3' miRNA: 3'- -GCG-CGGUGcuaGCGCU-UACG-CUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 18380 | 0.66 | 0.72875 |
Target: 5'- gCGCGCCgGCGcUCGCGAAccCGAU-GGc -3' miRNA: 3'- -GCGCGG-UGCuAGCGCUUacGCUAgCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 23187 | 0.66 | 0.73936 |
Target: 5'- uCGCGCuCGCGAUCaCGGccGgGggCGGc -3' miRNA: 3'- -GCGCG-GUGCUAGcGCUuaCgCuaGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 27344 | 0.66 | 0.749861 |
Target: 5'- uGCGCCACGcgCaGCGGc-GCGcagacgagcGUCGGc -3' miRNA: 3'- gCGCGGUGCuaG-CGCUuaCGC---------UAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 34371 | 0.67 | 0.674462 |
Target: 5'- aGCGCCccGCGuAUCa-GAGUGCGGcCGGg -3' miRNA: 3'- gCGCGG--UGC-UAGcgCUUACGCUaGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 13089 | 0.67 | 0.674462 |
Target: 5'- gGCGCU-CGAUCGCGgAGUGCugcaGGg -3' miRNA: 3'- gCGCGGuGCUAGCGC-UUACGcuagCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 8299 | 0.68 | 0.608081 |
Target: 5'- gCGCGUCAcCGAUC-CGAAcGCGAU-GGa -3' miRNA: 3'- -GCGCGGU-GCUAGcGCUUaCGCUAgCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 12433 | 0.68 | 0.608081 |
Target: 5'- gGCGCgCGCGAUCGCGAuggaccCGAgccuguaCGGu -3' miRNA: 3'- gCGCG-GUGCUAGCGCUuac---GCUa------GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 17255 | 0.68 | 0.619149 |
Target: 5'- gGCGUCAauaaGAUCGUGccggGCGAgacgUCGGg -3' miRNA: 3'- gCGCGGUg---CUAGCGCuua-CGCU----AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 33801 | 0.68 | 0.619149 |
Target: 5'- gCGCGgacCCACGGccaccaCGCGggUGUcaGGUCGGc -3' miRNA: 3'- -GCGC---GGUGCUa-----GCGCuuACG--CUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 13166 | 0.68 | 0.630229 |
Target: 5'- cCGCGCgCGCGcagacaGCGGGaGCGGUCGa -3' miRNA: 3'- -GCGCG-GUGCuag---CGCUUaCGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 24968 | 0.68 | 0.630229 |
Target: 5'- uGCG-CGCGGcCGCGAggGacaGGUCGGg -3' miRNA: 3'- gCGCgGUGCUaGCGCUuaCg--CUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 19186 | 0.67 | 0.652383 |
Target: 5'- aGCGgCGCGggCGUGGAgacagGCGGcgCGGu -3' miRNA: 3'- gCGCgGUGCuaGCGCUUa----CGCUa-GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 35834 | 0.67 | 0.652383 |
Target: 5'- uGCGCCGCGucggcguagaucAUCGCcugcgGAuUGCGcUCGGc -3' miRNA: 3'- gCGCGGUGC------------UAGCG-----CUuACGCuAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 41726 | 0.67 | 0.652383 |
Target: 5'- aCGgGCgGCGAUC-CGAucccgGCGcgCGGg -3' miRNA: 3'- -GCgCGgUGCUAGcGCUua---CGCuaGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 37450 | 0.67 | 0.662333 |
Target: 5'- gGCGCUugccugcGCGGUuugcagugCGcCGGAUGCGAUCaGGg -3' miRNA: 3'- gCGCGG-------UGCUA--------GC-GCUUACGCUAG-CC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 18036 | 0.66 | 0.749861 |
Target: 5'- gCGCGCCggacugACGGcCGaCGAuuggGCGAUCGu -3' miRNA: 3'- -GCGCGG------UGCUaGC-GCUua--CGCUAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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