Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28132 | 5' | -60.2 | NC_005887.1 | + | 8110 | 0.74 | 0.106198 |
Target: 5'- cGCCGCGCUC-GCCGA--GGCGCCGc -3' miRNA: 3'- cCGGCGUGAGuCGGCUcgUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 5502 | 0.75 | 0.094921 |
Target: 5'- cGGCCGCAgcacCGGCC--GCAGCACCGGc -3' miRNA: 3'- -CCGGCGUga--GUCGGcuCGUCGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 12360 | 0.75 | 0.084784 |
Target: 5'- aGGCgGUgACguggcaGGCCGAGCAGCACCGc -3' miRNA: 3'- -CCGgCG-UGag----UCGGCUCGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 24544 | 0.77 | 0.069481 |
Target: 5'- cGGCCGCACcuUCGGCCGGGC-GC-CCa- -3' miRNA: 3'- -CCGGCGUG--AGUCGGCUCGuCGuGGcu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 40623 | 0.8 | 0.038714 |
Target: 5'- uGGCCGCACaUCGGCaagacaggcacugaCGAGCGcGCGCCGAu -3' miRNA: 3'- -CCGGCGUG-AGUCG--------------GCUCGU-CGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 28211 | 0.71 | 0.188652 |
Target: 5'- cGCCGCGCgucUCGGCgguuuUGAGCAGCGCgCGc -3' miRNA: 3'- cCGGCGUG---AGUCG-----GCUCGUCGUG-GCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 16897 | 0.7 | 0.209698 |
Target: 5'- aGGuuGCAaaggcugCAGCCGAGCAG-AUCGGc -3' miRNA: 3'- -CCggCGUga-----GUCGGCUCGUCgUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 27700 | 0.69 | 0.251386 |
Target: 5'- uGCCGUAcCUC-GCCGcGUAGCACuCGAc -3' miRNA: 3'- cCGGCGU-GAGuCGGCuCGUCGUG-GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 40690 | 0.69 | 0.245036 |
Target: 5'- uGGCgCGCGCgcaCGGCUG-GCAGgaGCCGAu -3' miRNA: 3'- -CCG-GCGUGa--GUCGGCuCGUCg-UGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 18538 | 0.69 | 0.245036 |
Target: 5'- cGGgCGUuCUCGGUgGgcGGCGGCGCCGGc -3' miRNA: 3'- -CCgGCGuGAGUCGgC--UCGUCGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 14964 | 0.69 | 0.245036 |
Target: 5'- cGCCGCACUCGacgccuacGCCGcGCAG-GCCGc -3' miRNA: 3'- cCGGCGUGAGU--------CGGCuCGUCgUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 5280 | 0.69 | 0.245036 |
Target: 5'- --aCGCAgUCGcCCGAGCAGCGCgCGGc -3' miRNA: 3'- ccgGCGUgAGUcGGCUCGUCGUG-GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 14203 | 0.69 | 0.245036 |
Target: 5'- cGGgCGCGgcCUCGGacaGGGCGGCGCCGc -3' miRNA: 3'- -CCgGCGU--GAGUCgg-CUCGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 2704 | 0.69 | 0.238821 |
Target: 5'- gGGCgGCAagCGGCCGAGCcGCGCgaCGAc -3' miRNA: 3'- -CCGgCGUgaGUCGGCUCGuCGUG--GCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 17271 | 0.69 | 0.232737 |
Target: 5'- uGCCGgGCgagacGUCGGGCGGCGCCGc -3' miRNA: 3'- cCGGCgUGagu--CGGCUCGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 41551 | 0.69 | 0.232737 |
Target: 5'- cGGCgCGCACgcgaAGUC-AGcCAGCGCCGAg -3' miRNA: 3'- -CCG-GCGUGag--UCGGcUC-GUCGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 14631 | 0.69 | 0.232737 |
Target: 5'- aGGgCGCGCUCacggcAGCCGGcGCGGUGCUGc -3' miRNA: 3'- -CCgGCGUGAG-----UCGGCU-CGUCGUGGCu -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 4597 | 0.7 | 0.223276 |
Target: 5'- aGGCCGCgcagaugcaacagauGCUC-GCC--GCGGCGCCGGu -3' miRNA: 3'- -CCGGCG---------------UGAGuCGGcuCGUCGUGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 10080 | 0.7 | 0.220962 |
Target: 5'- aGCCGCAUUCcGUCGugugGGCGGCccgcGCCGAc -3' miRNA: 3'- cCGGCGUGAGuCGGC----UCGUCG----UGGCU- -5' |
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28132 | 5' | -60.2 | NC_005887.1 | + | 32175 | 0.7 | 0.209698 |
Target: 5'- aGGUCgGCGCUCAGCgaUGAGCcAGUGCCa- -3' miRNA: 3'- -CCGG-CGUGAGUCG--GCUCG-UCGUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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