Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 13182 | 0.67 | 0.596525 |
|
Target: 5'- --aGCGGGAGCGGUcgagCAGGcCGCCg -3' miRNA: 3'- ccgCGCCCUUGCUAaag-GUCUcGCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 11374 | 0.78 | 0.1494 |
|
Target: 5'- aGCGCGGGcgucAGCGcag-CCGGAGCGCUg -3' miRNA: 3'- cCGCGCCC----UUGCuaaaGGUCUCGCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 11055 | 0.67 | 0.596525 |
|
Target: 5'- aGGCGUGGacACuGAUUUCC---GCGCCg -3' miRNA: 3'- -CCGCGCCcuUG-CUAAAGGucuCGCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 8407 | 0.66 | 0.674281 |
|
Target: 5'- aGGCGCGuGGGcCGAgcacgaCCAGGcuauCGCCg -3' miRNA: 3'- -CCGCGC-CCUuGCUaaa---GGUCUc---GCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 4879 | 0.68 | 0.563467 |
|
Target: 5'- uGGCGCGGcaGAacugcGCGAgaUCCGcGAGCacgGCCu -3' miRNA: 3'- -CCGCGCC--CU-----UGCUaaAGGU-CUCG---CGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 4773 | 0.67 | 0.607618 |
|
Target: 5'- aGCGCGGGAAgcUGAcg-CCAGccGGCgagGCCg -3' miRNA: 3'- cCGCGCCCUU--GCUaaaGGUC--UCG---CGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 3297 | 0.67 | 0.640987 |
|
Target: 5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3' miRNA: 3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 1430 | 0.68 | 0.541698 |
|
Target: 5'- cGCGCGGGAcAgGAUguagcgCUcGAGCGUCu -3' miRNA: 3'- cCGCGCCCU-UgCUAaa----GGuCUCGCGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 929 | 0.7 | 0.428429 |
|
Target: 5'- cGGCGCGGGccACGcg-UCCAcGGGCaCCu -3' miRNA: 3'- -CCGCGCCCu-UGCuaaAGGU-CUCGcGG- -5' |
|||||||
| 28133 | 5' | -55 | NC_005887.1 | + | 282 | 0.65 | 0.707206 |
|
Target: 5'- uGGCGCGGGAACug---CguG-GCGUg -3' miRNA: 3'- -CCGCGCCCUUGcuaaaGguCuCGCGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home