Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28133 | 5' | -55 | NC_005887.1 | + | 21375 | 0.68 | 0.563467 |
Target: 5'- cGGCGCGGuGGGCGugcccgugaauGUgggcgacgCCAGcAGCGCa -3' miRNA: 3'- -CCGCGCC-CUUGC-----------UAaa------GGUC-UCGCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 14081 | 0.65 | 0.707206 |
Target: 5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3' miRNA: 3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 15916 | 0.65 | 0.707206 |
Target: 5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3' miRNA: 3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 34424 | 0.65 | 0.707206 |
Target: 5'- -aCGCGGG-GCGcucGUcUCCAGccguggccGGCGCCa -3' miRNA: 3'- ccGCGCCCuUGC---UAaAGGUC--------UCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 3297 | 0.67 | 0.640987 |
Target: 5'- cGGCGCGGucGAAuCGAacaucUUCUGcGAGCGCUc -3' miRNA: 3'- -CCGCGCC--CUU-GCUa----AAGGU-CUCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 26961 | 0.67 | 0.612062 |
Target: 5'- gGGCGCagcuucucggcauuuGaGGAACGcuggUUCCAGucGGUGCCc -3' miRNA: 3'- -CCGCG---------------C-CCUUGCua--AAGGUC--UCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 16208 | 0.68 | 0.585463 |
Target: 5'- cGGCGCGccggugguuggcGGggUGGUUgcgCgCGGcgcAGCGCCa -3' miRNA: 3'- -CCGCGC------------CCuuGCUAAa--G-GUC---UCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 14054 | 0.68 | 0.574441 |
Target: 5'- cGGCGCauucuucgucGGGAACGucaggugcaccGUgaCCGGcGCGCCc -3' miRNA: 3'- -CCGCG----------CCCUUGC-----------UAaaGGUCuCGCGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 4879 | 0.68 | 0.563467 |
Target: 5'- uGGCGCGGcaGAacugcGCGAgaUCCGcGAGCacgGCCu -3' miRNA: 3'- -CCGCGCC--CU-----UGCUaaAGGU-CUCG---CGG- -5' |
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28133 | 5' | -55 | NC_005887.1 | + | 17651 | 0.72 | 0.346909 |
Target: 5'- aGCGCGGGAuugACGGgcgugUUCGucGCGCCg -3' miRNA: 3'- cCGCGCCCU---UGCUaa---AGGUcuCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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