Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 14271 | 1.15 | 0.001234 |
Target: 5'- gCCAGAUCUAUGUCGAUCCGGACACGCu -3' miRNA: 3'- -GGUCUAGAUACAGCUAGGCCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 26786 | 0.75 | 0.425339 |
Target: 5'- gCCcGGUCUAUGUCGAgcugcCCGcGGcCGCGCg -3' miRNA: 3'- -GGuCUAGAUACAGCUa----GGC-CU-GUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 14509 | 0.75 | 0.476304 |
Target: 5'- gCAcGGUCUG-GUCGAUCgCGGuuGCGCGCg -3' miRNA: 3'- gGU-CUAGAUaCAGCUAG-GCC--UGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 22623 | 0.74 | 0.508297 |
Target: 5'- aUCAGcGUCUcgggcAUGUCGAUCgCGGACggcauGCGCa -3' miRNA: 3'- -GGUC-UAGA-----UACAGCUAG-GCCUG-----UGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 24920 | 0.73 | 0.574709 |
Target: 5'- gCCGGAUCggcaccguUGUCGAUC-GcGACGCGUg -3' miRNA: 3'- -GGUCUAGau------ACAGCUAGgC-CUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 2330 | 0.73 | 0.586003 |
Target: 5'- gCUGGcAUCUAUGgCGAUCCGG-CGgGCg -3' miRNA: 3'- -GGUC-UAGAUACaGCUAGGCCuGUgCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 30685 | 0.71 | 0.698397 |
Target: 5'- uCCGGAUCUG-------CCGGACGCGCu -3' miRNA: 3'- -GGUCUAGAUacagcuaGGCCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 22900 | 0.7 | 0.710679 |
Target: 5'- aCCgAGAUCUGccgGUUGAgcacgUUCGGAUGCGCc -3' miRNA: 3'- -GG-UCUAGAUa--CAGCU-----AGGCCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 42122 | 0.7 | 0.732742 |
Target: 5'- -aGGAcUUGUGgCGAUCCuGGCGCGCa -3' miRNA: 3'- ggUCUaGAUACaGCUAGGcCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 23645 | 0.7 | 0.732742 |
Target: 5'- aCCAGG-CUGuacgcgcugauUGUCGGagauaaUCCGGcGCGCGCg -3' miRNA: 3'- -GGUCUaGAU-----------ACAGCU------AGGCC-UGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 3455 | 0.69 | 0.805882 |
Target: 5'- aCCAGAgcaUcgGUCuGUUCGGGCcugGCGCg -3' miRNA: 3'- -GGUCUag-AuaCAGcUAGGCCUG---UGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 22883 | 0.68 | 0.825203 |
Target: 5'- aUCAGAUCcucg-CGcgCUGGugGCGCa -3' miRNA: 3'- -GGUCUAGauacaGCuaGGCCugUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 11950 | 0.68 | 0.842752 |
Target: 5'- aCGGGgggcCUguaAUGUCGAUCCGGACccugucuACGa -3' miRNA: 3'- gGUCUa---GA---UACAGCUAGGCCUG-------UGCg -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 29946 | 0.68 | 0.842752 |
Target: 5'- uCgGGAUCgacgGUGUCGAgcgCCGcGAacaccgcCGCGCg -3' miRNA: 3'- -GgUCUAGa---UACAGCUa--GGC-CU-------GUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 4097 | 0.67 | 0.869518 |
Target: 5'- gCAGAUCggcaUCGAguUCgcgcaGGACACGCg -3' miRNA: 3'- gGUCUAGauacAGCU--AGg----CCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 24439 | 0.67 | 0.877621 |
Target: 5'- gCAGGUCg----CGAgcaGGACACGCa -3' miRNA: 3'- gGUCUAGauacaGCUaggCCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 13190 | 0.67 | 0.885452 |
Target: 5'- cCCGGcacgcUCgagGUGUCGAccUUCGG-CACGCc -3' miRNA: 3'- -GGUCu----AGa--UACAGCU--AGGCCuGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 19888 | 0.67 | 0.885452 |
Target: 5'- gCCAG-UgUGUcGUCGAcgcccccguuUCCGGuCGCGCc -3' miRNA: 3'- -GGUCuAgAUA-CAGCU----------AGGCCuGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 28999 | 0.67 | 0.893006 |
Target: 5'- gCCAGugcucgCUGUgcGUCGAcgcaaUGGGCGCGCg -3' miRNA: 3'- -GGUCua----GAUA--CAGCUag---GCCUGUGCG- -5' |
|||||||
28134 | 3' | -50.4 | NC_005887.1 | + | 1529 | 0.67 | 0.893006 |
Target: 5'- cCCGGAcCUGcUGUCGAcgaCCgcgaaGGACugGCu -3' miRNA: 3'- -GGUCUaGAU-ACAGCUa--GG-----CCUGugCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home