Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28134 | 5' | -60 | NC_005887.1 | + | 24008 | 0.67 | 0.31492 |
Target: 5'- gUGCGuGCGCAgacGGCCgcGAgGCCGACGu -3' miRNA: 3'- gGCGUuCGCGU---CCGG--CUgCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 26407 | 0.68 | 0.307294 |
Target: 5'- aUGUucGCGCAcccGGCCaGCGCCGGCc- -3' miRNA: 3'- gGCGuuCGCGU---CCGGcUGCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 31678 | 0.68 | 0.285265 |
Target: 5'- gCCGUuAGC-CGGGCCGGCugguucGUCGGCAGa -3' miRNA: 3'- -GGCGuUCGcGUCCGGCUG------CGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 5465 | 0.68 | 0.292467 |
Target: 5'- gCCGCAuccaccacGaCGCAGGCCGAUGgCG-CAGc -3' miRNA: 3'- -GGCGUu-------C-GCGUCCGGCUGCgGCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 40692 | 0.68 | 0.278205 |
Target: 5'- gCGCGcGCGCAcGGCUGGCaggaGCCGAuCGAa -3' miRNA: 3'- gGCGUuCGCGU-CCGGCUG----CGGCU-GUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 41037 | 0.68 | 0.299809 |
Target: 5'- gCCGCGcGGUGCAGGUCGA-GCuCGAgAAc -3' miRNA: 3'- -GGCGU-UCGCGUCCGGCUgCG-GCUgUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 40355 | 0.68 | 0.307294 |
Target: 5'- gCCGuCGAGCGC-GGCCG-UGCCGcucgucgcgcGCGAg -3' miRNA: 3'- -GGC-GUUCGCGuCCGGCuGCGGC----------UGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 9296 | 0.68 | 0.278205 |
Target: 5'- gCCGCAGGUuaCGGGCacCGAaaCGCCGACGc -3' miRNA: 3'- -GGCGUUCGc-GUCCG--GCU--GCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 16411 | 0.68 | 0.271284 |
Target: 5'- gCCGgAAGCucacGCAGGCCGAgaUCGACGGg -3' miRNA: 3'- -GGCgUUCG----CGUCCGGCUgcGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 8580 | 0.68 | 0.271284 |
Target: 5'- aCCGCA---GCAGGUuucguuCGACGCUGGCGAg -3' miRNA: 3'- -GGCGUucgCGUCCG------GCUGCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 4856 | 0.68 | 0.292467 |
Target: 5'- uCCGCGAGCaC-GGCCu-CGCCGGCu- -3' miRNA: 3'- -GGCGUUCGcGuCCGGcuGCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 41697 | 0.68 | 0.299068 |
Target: 5'- gCCGCGcAGaCGCagcagauccucacGGGCCG-CGCCGGCc- -3' miRNA: 3'- -GGCGU-UC-GCG-------------UCCGGCuGCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 3776 | 0.68 | 0.307294 |
Target: 5'- aUCGCGgucGGCGCGcGGCuCGACGgCGugGu -3' miRNA: 3'- -GGCGU---UCGCGU-CCG-GCUGCgGCugUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 1554 | 0.68 | 0.299809 |
Target: 5'- gCCGCGccGCGCgAGcGCCGcACGCCGuCGg -3' miRNA: 3'- -GGCGUu-CGCG-UC-CGGC-UGCGGCuGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 16245 | 0.68 | 0.299809 |
Target: 5'- gCCgGCGAGCGCAcGGgcaCCGuCGCCGAg-- -3' miRNA: 3'- -GG-CGUUCGCGU-CC---GGCuGCGGCUguu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 24469 | 0.68 | 0.299809 |
Target: 5'- gCCGUuGGCGCGGccgaucgugucGUCGAUGCCcGGCAGg -3' miRNA: 3'- -GGCGuUCGCGUC-----------CGGCUGCGG-CUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 14615 | 0.68 | 0.285265 |
Target: 5'- uCCGCGcGCGaCAuGCCGAucgacgcgcCGCCGACGg -3' miRNA: 3'- -GGCGUuCGC-GUcCGGCU---------GCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 14981 | 0.68 | 0.278205 |
Target: 5'- aCGCc-GCGCAGGCCGcgcAgGCCG-CAGg -3' miRNA: 3'- gGCGuuCGCGUCCGGC---UgCGGCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 36306 | 0.69 | 0.238746 |
Target: 5'- gCCGaucuGCGCGgcGGUCGACGCCGcGCAc -3' miRNA: 3'- -GGCguu-CGCGU--CCGGCUGCGGC-UGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 13183 | 0.69 | 0.238746 |
Target: 5'- gCGgGAGCggucgaGCAGGCCGcCGgCCGACGu -3' miRNA: 3'- gGCgUUCG------CGUCCGGCuGC-GGCUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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