miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 23579 0.73 0.125162
Target:  5'- cCCGCGcguucgucAGCGC-GGCCGAacaCGUCGGCAAg -3'
miRNA:   3'- -GGCGU--------UCGCGuCCGGCU---GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 11450 0.72 0.143695
Target:  5'- gCCGCcAGCGCuccGGCUG-CGCUGACGc -3'
miRNA:   3'- -GGCGuUCGCGu--CCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14687 0.72 0.143695
Target:  5'- gCCGUGAGCGCGcccucgaCGGCGCCGACGg -3'
miRNA:   3'- -GGCGUUCGCGUccg----GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 3075 0.72 0.143695
Target:  5'- cCCGC-GGCGCuGGCCGcaggcGCGuuGACGGa -3'
miRNA:   3'- -GGCGuUCGCGuCCGGC-----UGCggCUGUU- -5'
28134 5' -60 NC_005887.1 + 42058 0.72 0.151789
Target:  5'- aCGUggGcCGCAGGCCGugcUGCUGAUAGg -3'
miRNA:   3'- gGCGuuC-GCGUCCGGCu--GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 26144 0.72 0.143695
Target:  5'- aCGCc-GCGCGGGCCGcugacGCGCUGACc- -3'
miRNA:   3'- gGCGuuCGCGUCCGGC-----UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 32367 0.72 0.147692
Target:  5'- aCUGCGGcGCGCcGGCUGGC-CCGACGAu -3'
miRNA:   3'- -GGCGUU-CGCGuCCGGCUGcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 14526 0.72 0.143695
Target:  5'- uUGCAGGCGC-GGCCGuCGgCGGCGc -3'
miRNA:   3'- gGCGUUCGCGuCCGGCuGCgGCUGUu -5'
28134 5' -60 NC_005887.1 + 12647 0.72 0.164705
Target:  5'- cCCGCAGGUuacgaGUGGGUCGGCgauuugccGCCGACGAa -3'
miRNA:   3'- -GGCGUUCG-----CGUCCGGCUG--------CGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 17956 0.72 0.151789
Target:  5'- gUCGCAcauauGCGCGGGCU--CGCCGGCAu -3'
miRNA:   3'- -GGCGUu----CGCGUCCGGcuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 16503 0.72 0.155989
Target:  5'- uCgGCGAuGuCGCAGGCCGAucgcgucgcCGCCGGCGc -3'
miRNA:   3'- -GgCGUU-C-GCGUCCGGCU---------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 21628 0.72 0.164259
Target:  5'- gCCGguAGCGUuGGugaauacCCGACGCCGACc- -3'
miRNA:   3'- -GGCguUCGCGuCC-------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 24947 0.72 0.164705
Target:  5'- aCGCGugcGCGCGGGCCGccuuGCGCgCGGCc- -3'
miRNA:   3'- gGCGUu--CGCGUCCGGC----UGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 16450 0.71 0.18346
Target:  5'- aCCGCGugcGCGCGGGCauGCGCuCGACc- -3'
miRNA:   3'- -GGCGUu--CGCGUCCGgcUGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 8947 0.71 0.191987
Target:  5'- uCCGCGAGCGCGuacGGCguCGcgaucucgacgggcGCGCCGGCGu -3'
miRNA:   3'- -GGCGUUCGCGU---CCG--GC--------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 26915 0.71 0.178601
Target:  5'- gCGCccGAGuCGCuGGCCGcCGUCGACGAa -3'
miRNA:   3'- gGCG--UUC-GCGuCCGGCuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13381 0.71 0.18346
Target:  5'- gCGCucGCGCugaAGGCCGGCG-CGGCGGa -3'
miRNA:   3'- gGCGuuCGCG---UCCGGCUGCgGCUGUU- -5'
28134 5' -60 NC_005887.1 + 14025 0.71 0.18346
Target:  5'- aCCGCcGGCGCGccGCCGGCGCagccugaGACGAu -3'
miRNA:   3'- -GGCGuUCGCGUc-CGGCUGCGg------CUGUU- -5'
28134 5' -60 NC_005887.1 + 30242 0.71 0.173857
Target:  5'- gUGgAAGCuGCAGGCguuccgcgacuuCGACGCCGGCAu -3'
miRNA:   3'- gGCgUUCG-CGUCCG------------GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 5642 0.71 0.173857
Target:  5'- aCGaacuGGCGCAGGUCaGCGUCGGCGAu -3'
miRNA:   3'- gGCgu--UCGCGUCCGGcUGCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.