miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 8947 0.71 0.191987
Target:  5'- uCCGCGAGCGCGuacGGCguCGcgaucucgacgggcGCGCCGGCGu -3'
miRNA:   3'- -GGCGUUCGCGU---CCG--GC--------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 37454 0.7 0.197165
Target:  5'- aCCGCGcAGCGCcagcugaaggagaaGGaGCCGACGCUG-CAAa -3'
miRNA:   3'- -GGCGU-UCGCG--------------UC-CGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 18136 0.7 0.198741
Target:  5'- aCCgGCgAAGCGCGGGCC---GCCGACGu -3'
miRNA:   3'- -GG-CG-UUCGCGUCCGGcugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14289 0.7 0.202463
Target:  5'- gCCGCGccgaacAGCGCGGcGCCGcccuguccgaggccGCGCCcGACAGc -3'
miRNA:   3'- -GGCGU------UCGCGUC-CGGC--------------UGCGG-CUGUU- -5'
28134 5' -60 NC_005887.1 + 9094 0.7 0.204077
Target:  5'- aUGCcAGCGCGGGCacCGGCGCCGuuAc -3'
miRNA:   3'- gGCGuUCGCGUCCG--GCUGCGGCugUu -5'
28134 5' -60 NC_005887.1 + 37125 0.7 0.206245
Target:  5'- gCCGUcAGCGagaAGGCCGgcaagaaggggcucaGCGCCGACc- -3'
miRNA:   3'- -GGCGuUCGCg--UCCGGC---------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 4767 0.7 0.209536
Target:  5'- gCGaCGAGCGCGGgaaGCUGACGCCagccGGCGAg -3'
miRNA:   3'- gGC-GUUCGCGUC---CGGCUGCGG----CUGUU- -5'
28134 5' -60 NC_005887.1 + 2358 0.7 0.21512
Target:  5'- aCCaGCGcuCGCAGGCCGACGacgaaGACAc -3'
miRNA:   3'- -GG-CGUucGCGUCCGGCUGCgg---CUGUu -5'
28134 5' -60 NC_005887.1 + 34424 0.7 0.21512
Target:  5'- aCGCgGGGCGCucgucuccaGCCGugGCCGGCGc -3'
miRNA:   3'- gGCG-UUCGCGuc-------CGGCugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 613 0.7 0.21512
Target:  5'- uUCGCGcuguauccGGCGCGGcGCgCGGCGgCCGACGc -3'
miRNA:   3'- -GGCGU--------UCGCGUC-CG-GCUGC-GGCUGUu -5'
28134 5' -60 NC_005887.1 + 18691 0.7 0.21739
Target:  5'- gUGCAggaugcGGCGCAGGgcaaggacacgcacaUCGGCGCCGACu- -3'
miRNA:   3'- gGCGU------UCGCGUCC---------------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 35472 0.7 0.220832
Target:  5'- cUCGUggGCGaAGGCCGuGCGCgGGCGc -3'
miRNA:   3'- -GGCGuuCGCgUCCGGC-UGCGgCUGUu -5'
28134 5' -60 NC_005887.1 + 10159 0.7 0.220832
Target:  5'- gCCGUcGGCGCGGGCCGcCcacaCGACGGa -3'
miRNA:   3'- -GGCGuUCGCGUCCGGCuGcg--GCUGUU- -5'
28134 5' -60 NC_005887.1 + 28402 0.7 0.220832
Target:  5'- aUGCc-GCGCcGGCgcaGACGCCGACAAc -3'
miRNA:   3'- gGCGuuCGCGuCCGg--CUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 4623 0.7 0.220832
Target:  5'- gCCGC-GGCGCcGGUgGcCGCCGGCGc -3'
miRNA:   3'- -GGCGuUCGCGuCCGgCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 10279 0.7 0.226673
Target:  5'- gCCGUccGGCGCGGGCauCGACGCgacgcacuCGACGAa -3'
miRNA:   3'- -GGCGu-UCGCGUCCG--GCUGCG--------GCUGUU- -5'
28134 5' -60 NC_005887.1 + 16023 0.69 0.232643
Target:  5'- aCUGCGacagcGGCGUGcGGCgCGugGCCGGCGc -3'
miRNA:   3'- -GGCGU-----UCGCGU-CCG-GCugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15691 0.69 0.232643
Target:  5'- aCCGCc-GCGC-GGCCGGaugauuccgcCGCCGGCGu -3'
miRNA:   3'- -GGCGuuCGCGuCCGGCU----------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 30136 0.69 0.232643
Target:  5'- aUGCAAGCuuguacaaGuCGGcGCCGAUGCCGGCGu -3'
miRNA:   3'- gGCGUUCG--------C-GUC-CGGCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 37515 0.69 0.232643
Target:  5'- aCUGCAAaccGCGCAGGCaaGCGCCG-CGc -3'
miRNA:   3'- -GGCGUU---CGCGUCCGgcUGCGGCuGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.