miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 36306 0.69 0.238746
Target:  5'- gCCGaucuGCGCGgcGGUCGACGCCGcGCAc -3'
miRNA:   3'- -GGCguu-CGCGU--CCGGCUGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 13183 0.69 0.238746
Target:  5'- gCGgGAGCggucgaGCAGGCCGcCGgCCGACGu -3'
miRNA:   3'- gGCgUUCG------CGUCCGGCuGC-GGCUGUu -5'
28134 5' -60 NC_005887.1 + 28638 0.69 0.244982
Target:  5'- aCCGCGuccGCGCagcGGGCggCGACGCCuACAAa -3'
miRNA:   3'- -GGCGUu--CGCG---UCCG--GCUGCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 37004 0.69 0.244982
Target:  5'- -aGCAcGCGCAGGCCGuACGCgaACAc -3'
miRNA:   3'- ggCGUuCGCGUCCGGC-UGCGgcUGUu -5'
28134 5' -60 NC_005887.1 + 10081 0.69 0.244982
Target:  5'- gCCGCAuuccgucGUGUGGGCgGcccGCGCCGACGg -3'
miRNA:   3'- -GGCGUu------CGCGUCCGgC---UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 34002 0.69 0.250709
Target:  5'- cUCGcCGAGCGCcgucggcAGGUCGACGUCGAa-- -3'
miRNA:   3'- -GGC-GUUCGCG-------UCCGGCUGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 24872 0.69 0.251352
Target:  5'- aCCGUccAGGCgGC-GGCCGAUGCCGcGCGc -3'
miRNA:   3'- -GGCG--UUCG-CGuCCGGCUGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 2867 0.69 0.251352
Target:  5'- gCCGCAGGCGguGGauaaCG-CGCaggCGACGAc -3'
miRNA:   3'- -GGCGUUCGCguCCg---GCuGCG---GCUGUU- -5'
28134 5' -60 NC_005887.1 + 27982 0.69 0.256546
Target:  5'- gCCGCcGGCuCGGGCCGAaucgcgucgucgGCCGGCGu -3'
miRNA:   3'- -GGCGuUCGcGUCCGGCUg-----------CGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14702 0.69 0.257859
Target:  5'- gUCGCGGcGgGCGGGCCGG-GCgCGGCGAu -3'
miRNA:   3'- -GGCGUU-CgCGUCCGGCUgCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 7210 0.69 0.257859
Target:  5'- cUCGCGuGCGCAGGCgcuguCGGCGUCGGg-- -3'
miRNA:   3'- -GGCGUuCGCGUCCG-----GCUGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 23204 0.69 0.257859
Target:  5'- gCCGgGGGCGgcuacuucaaGGGCC-ACGCCGACGg -3'
miRNA:   3'- -GGCgUUCGCg---------UCCGGcUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 5499 0.69 0.257859
Target:  5'- gCCaGCGGGCGCGuGGUCG-CGCCGGu-- -3'
miRNA:   3'- -GG-CGUUCGCGU-CCGGCuGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 15373 0.69 0.257859
Target:  5'- aCGCccgaGCAGGUCGACGCCG-CGc -3'
miRNA:   3'- gGCGuucgCGUCCGGCUGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 17656 0.69 0.264502
Target:  5'- gCGCGAGCGCGGGauugaCGggcguguucgucGCGCCGGuCAc -3'
miRNA:   3'- gGCGUUCGCGUCCg----GC------------UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 33592 0.69 0.264502
Target:  5'- -aGCAGGCGCucacGG-UGAuCGCCGACAAg -3'
miRNA:   3'- ggCGUUCGCGu---CCgGCU-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13288 0.69 0.264502
Target:  5'- gCGCAGGCGCugaaccagaucGGCCaGGCGuUCGGCAAc -3'
miRNA:   3'- gGCGUUCGCGu----------CCGG-CUGC-GGCUGUU- -5'
28134 5' -60 NC_005887.1 + 8580 0.68 0.271284
Target:  5'- aCCGCA---GCAGGUuucguuCGACGCUGGCGAg -3'
miRNA:   3'- -GGCGUucgCGUCCG------GCUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 16411 0.68 0.271284
Target:  5'- gCCGgAAGCucacGCAGGCCGAgaUCGACGGg -3'
miRNA:   3'- -GGCgUUCG----CGUCCGGCUgcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 40692 0.68 0.278205
Target:  5'- gCGCGcGCGCAcGGCUGGCaggaGCCGAuCGAa -3'
miRNA:   3'- gGCGUuCGCGU-CCGGCUG----CGGCU-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.