miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 40692 0.68 0.278205
Target:  5'- gCGCGcGCGCAcGGCUGGCaggaGCCGAuCGAa -3'
miRNA:   3'- gGCGUuCGCGU-CCGGCUG----CGGCU-GUU- -5'
28134 5' -60 NC_005887.1 + 9296 0.68 0.278205
Target:  5'- gCCGCAGGUuaCGGGCacCGAaaCGCCGACGc -3'
miRNA:   3'- -GGCGUUCGc-GUCCG--GCU--GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14615 0.68 0.285265
Target:  5'- uCCGCGcGCGaCAuGCCGAucgacgcgcCGCCGACGg -3'
miRNA:   3'- -GGCGUuCGC-GUcCGGCU---------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 31678 0.68 0.285265
Target:  5'- gCCGUuAGC-CGGGCCGGCugguucGUCGGCAGa -3'
miRNA:   3'- -GGCGuUCGcGUCCGGCUG------CGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 5465 0.68 0.292467
Target:  5'- gCCGCAuccaccacGaCGCAGGCCGAUGgCG-CAGc -3'
miRNA:   3'- -GGCGUu-------C-GCGUCCGGCUGCgGCuGUU- -5'
28134 5' -60 NC_005887.1 + 4856 0.68 0.292467
Target:  5'- uCCGCGAGCaC-GGCCu-CGCCGGCu- -3'
miRNA:   3'- -GGCGUUCGcGuCCGGcuGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 41697 0.68 0.299068
Target:  5'- gCCGCGcAGaCGCagcagauccucacGGGCCG-CGCCGGCc- -3'
miRNA:   3'- -GGCGU-UC-GCG-------------UCCGGCuGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 16245 0.68 0.299809
Target:  5'- gCCgGCGAGCGCAcGGgcaCCGuCGCCGAg-- -3'
miRNA:   3'- -GG-CGUUCGCGU-CC---GGCuGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 24469 0.68 0.299809
Target:  5'- gCCGUuGGCGCGGccgaucgugucGUCGAUGCCcGGCAGg -3'
miRNA:   3'- -GGCGuUCGCGUC-----------CGGCUGCGG-CUGUU- -5'
28134 5' -60 NC_005887.1 + 41037 0.68 0.299809
Target:  5'- gCCGCGcGGUGCAGGUCGA-GCuCGAgAAc -3'
miRNA:   3'- -GGCGU-UCGCGUCCGGCUgCG-GCUgUU- -5'
28134 5' -60 NC_005887.1 + 1554 0.68 0.299809
Target:  5'- gCCGCGccGCGCgAGcGCCGcACGCCGuCGg -3'
miRNA:   3'- -GGCGUu-CGCG-UC-CGGC-UGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 3776 0.68 0.307294
Target:  5'- aUCGCGgucGGCGCGcGGCuCGACGgCGugGu -3'
miRNA:   3'- -GGCGU---UCGCGU-CCG-GCUGCgGCugUu -5'
28134 5' -60 NC_005887.1 + 26407 0.68 0.307294
Target:  5'- aUGUucGCGCAcccGGCCaGCGCCGGCc- -3'
miRNA:   3'- gGCGuuCGCGU---CCGGcUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 40355 0.68 0.307294
Target:  5'- gCCGuCGAGCGC-GGCCG-UGCCGcucgucgcgcGCGAg -3'
miRNA:   3'- -GGC-GUUCGCGuCCGGCuGCGGC----------UGUU- -5'
28134 5' -60 NC_005887.1 + 30506 0.67 0.312617
Target:  5'- aCCGCAAaacugcaucagcccGCGUAGGCgGcCGUCGGCc- -3'
miRNA:   3'- -GGCGUU--------------CGCGUCCGgCuGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 5019 0.67 0.31492
Target:  5'- cCCGCcgAGGCGCAGaCCGAaGCCaACGAa -3'
miRNA:   3'- -GGCG--UUCGCGUCcGGCUgCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 42089 0.67 0.31492
Target:  5'- gUCGCGuggGGCGCGauGCCG-CGUCGACGAa -3'
miRNA:   3'- -GGCGU---UCGCGUc-CGGCuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13566 0.67 0.31492
Target:  5'- gCCGCccgaGCAGGCCGACGaCG-CGAa -3'
miRNA:   3'- -GGCGuucgCGUCCGGCUGCgGCuGUU- -5'
28134 5' -60 NC_005887.1 + 24008 0.67 0.31492
Target:  5'- gUGCGuGCGCAgacGGCCgcGAgGCCGACGu -3'
miRNA:   3'- gGCGUuCGCGU---CCGG--CUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 5765 0.67 0.322688
Target:  5'- gCCGCGaaGGCGCuGGCCG-CGaaGugGGg -3'
miRNA:   3'- -GGCGU--UCGCGuCCGGCuGCggCugUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.