miRNA display CGI


Results 101 - 120 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 35907 0.67 0.322688
Target:  5'- uCCGCAGGCGaugaucuacGCCGACG-CGGCGc -3'
miRNA:   3'- -GGCGUUCGCguc------CGGCUGCgGCUGUu -5'
28134 5' -60 NC_005887.1 + 11617 0.67 0.322688
Target:  5'- aCGCAGGUGCAGagcgugcgcaauGCCGA-GCuCGACGc -3'
miRNA:   3'- gGCGUUCGCGUC------------CGGCUgCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 5765 0.67 0.322688
Target:  5'- gCCGCGaaGGCGCuGGCCG-CGaaGugGGg -3'
miRNA:   3'- -GGCGU--UCGCGuCCGGCuGCggCugUU- -5'
28134 5' -60 NC_005887.1 + 27403 0.67 0.322688
Target:  5'- gCCGCugcgcguGGCGCAGucgaCGugGCCgGACGAg -3'
miRNA:   3'- -GGCGu------UCGCGUCcg--GCugCGG-CUGUU- -5'
28134 5' -60 NC_005887.1 + 24976 0.67 0.330599
Target:  5'- nCCGCGAGgGaCAGGUCGGgguaguUGCCGAg-- -3'
miRNA:   3'- -GGCGUUCgC-GUCCGGCU------GCGGCUguu -5'
28134 5' -60 NC_005887.1 + 3075 0.67 0.330599
Target:  5'- cCUGCAGGCGCugaacGCCGACcacgGCCG-CAu -3'
miRNA:   3'- -GGCGUUCGCGuc---CGGCUG----CGGCuGUu -5'
28134 5' -60 NC_005887.1 + 40427 0.67 0.330599
Target:  5'- gCGCGacGGCgGCAcGGCCG-CGCuCGACGg -3'
miRNA:   3'- gGCGU--UCG-CGU-CCGGCuGCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 24436 0.67 0.330599
Target:  5'- cCUGC-AGCGC-GGCuCGugguucguCGCCGACGAg -3'
miRNA:   3'- -GGCGuUCGCGuCCG-GCu-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 26224 0.67 0.330599
Target:  5'- cCUGCAgcuGGCGCacGGGuCCGAucCGCuCGACGAu -3'
miRNA:   3'- -GGCGU---UCGCG--UCC-GGCU--GCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 40965 0.67 0.33784
Target:  5'- aCCGCuucGGCGCGGGCCuGAUGuacgugcCCGAg-- -3'
miRNA:   3'- -GGCGu--UCGCGUCCGG-CUGC-------GGCUguu -5'
28134 5' -60 NC_005887.1 + 31203 0.67 0.338652
Target:  5'- gCGUAuGCGCAcGGCCuGC-CCGGCAAg -3'
miRNA:   3'- gGCGUuCGCGU-CCGGcUGcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 15826 0.67 0.338652
Target:  5'- gCGCAGGUGCAGcGCUuGCGCgGcGCGAu -3'
miRNA:   3'- gGCGUUCGCGUC-CGGcUGCGgC-UGUU- -5'
28134 5' -60 NC_005887.1 + 18368 0.67 0.338652
Target:  5'- uCCGCGuagacGGCGC--GCCGGCGCUcGCGAa -3'
miRNA:   3'- -GGCGU-----UCGCGucCGGCUGCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 18023 0.67 0.338652
Target:  5'- gCCGCGcgcuuacgcGCGCcGGaCUGACGgCCGACGAu -3'
miRNA:   3'- -GGCGUu--------CGCGuCC-GGCUGC-GGCUGUU- -5'
28134 5' -60 NC_005887.1 + 2939 0.67 0.345196
Target:  5'- gCGCAAGCGCcgcGGCaccgccgCGAccauccuCGCCGGCGAc -3'
miRNA:   3'- gGCGUUCGCGu--CCG-------GCU-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 11329 0.67 0.346846
Target:  5'- gCCGCAAcCGCGacGGCCGguACGCUGAgCAc -3'
miRNA:   3'- -GGCGUUcGCGU--CCGGC--UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 28117 0.67 0.346846
Target:  5'- -gGguGGCGCAGcGCCugcucgaucACGCCGACGc -3'
miRNA:   3'- ggCguUCGCGUC-CGGc--------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 29002 0.67 0.346846
Target:  5'- aCCGCcAGUGCucGCUGuGCGUCGACGc -3'
miRNA:   3'- -GGCGuUCGCGucCGGC-UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 22867 0.67 0.346846
Target:  5'- gCCGCGuAGCucgugaacaacaGC-GGCCG-CGCCGGCGu -3'
miRNA:   3'- -GGCGU-UCG------------CGuCCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 27217 0.67 0.346846
Target:  5'- cCCGCGcccguGGcCGUucGGCCGcgugauCGCCGACGAg -3'
miRNA:   3'- -GGCGU-----UC-GCGu-CCGGCu-----GCGGCUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.