miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 10279 0.7 0.226673
Target:  5'- gCCGUccGGCGCGGGCauCGACGCgacgcacuCGACGAa -3'
miRNA:   3'- -GGCGu-UCGCGUCCG--GCUGCG--------GCUGUU- -5'
28134 5' -60 NC_005887.1 + 10370 0.66 0.37227
Target:  5'- aCGUAcaacGGCGU--GCCGACGUCGACu- -3'
miRNA:   3'- gGCGU----UCGCGucCGGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 10997 0.67 0.354341
Target:  5'- gCGCGuaaucgGGCgugaGCAGGCCGgccgacgucaucuGCGCCGGCu- -3'
miRNA:   3'- gGCGU------UCG----CGUCCGGC-------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 11329 0.67 0.346846
Target:  5'- gCCGCAAcCGCGacGGCCGguACGCUGAgCAc -3'
miRNA:   3'- -GGCGUUcGCGU--CCGGC--UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 11387 0.77 0.067194
Target:  5'- gCGCAgccggAGCGCuggcGGCCGGCGCCGcCAAg -3'
miRNA:   3'- gGCGU-----UCGCGu---CCGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 11450 0.72 0.143695
Target:  5'- gCCGCcAGCGCuccGGCUG-CGCUGACGc -3'
miRNA:   3'- -GGCGuUCGCGu--CCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 11617 0.67 0.322688
Target:  5'- aCGCAGGUGCAGagcgugcgcaauGCCGA-GCuCGACGc -3'
miRNA:   3'- gGCGUUCGCGUC------------CGGCUgCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 12647 0.72 0.164705
Target:  5'- cCCGCAGGUuacgaGUGGGUCGGCgauuugccGCCGACGAa -3'
miRNA:   3'- -GGCGUUCG-----CGUCCGGCUG--------CGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13183 0.69 0.238746
Target:  5'- gCGgGAGCggucgaGCAGGCCGcCGgCCGACGu -3'
miRNA:   3'- gGCgUUCG------CGUCCGGCuGC-GGCUGUu -5'
28134 5' -60 NC_005887.1 + 13288 0.69 0.264502
Target:  5'- gCGCAGGCGCugaaccagaucGGCCaGGCGuUCGGCAAc -3'
miRNA:   3'- gGCGUUCGCGu----------CCGG-CUGC-GGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13381 0.71 0.18346
Target:  5'- gCGCucGCGCugaAGGCCGGCG-CGGCGGa -3'
miRNA:   3'- gGCGuuCGCG---UCCGGCUGCgGCUGUU- -5'
28134 5' -60 NC_005887.1 + 13385 0.66 0.398934
Target:  5'- uCCGCGA-UGC-GGCCGGCGuuGcCGAa -3'
miRNA:   3'- -GGCGUUcGCGuCCGGCUGCggCuGUU- -5'
28134 5' -60 NC_005887.1 + 13566 0.67 0.31492
Target:  5'- gCCGCccgaGCAGGCCGACGaCG-CGAa -3'
miRNA:   3'- -GGCGuucgCGUCCGGCUGCgGCuGUU- -5'
28134 5' -60 NC_005887.1 + 14025 0.71 0.18346
Target:  5'- aCCGCcGGCGCGccGCCGGCGCagccugaGACGAu -3'
miRNA:   3'- -GGCGuUCGCGUc-CGGCUGCGg------CUGUU- -5'
28134 5' -60 NC_005887.1 + 14289 0.7 0.202463
Target:  5'- gCCGCGccgaacAGCGCGGcGCCGcccuguccgaggccGCGCCcGACAGc -3'
miRNA:   3'- -GGCGU------UCGCGUC-CGGC--------------UGCGG-CUGUU- -5'
28134 5' -60 NC_005887.1 + 14308 1.07 0.000294
Target:  5'- cCCGCAAGCGCAGGCCGACGCCGACAAg -3'
miRNA:   3'- -GGCGUUCGCGUCCGGCUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 14526 0.72 0.143695
Target:  5'- uUGCAGGCGC-GGCCGuCGgCGGCGc -3'
miRNA:   3'- gGCGUUCGCGuCCGGCuGCgGCUGUu -5'
28134 5' -60 NC_005887.1 + 14615 0.68 0.285265
Target:  5'- uCCGCGcGCGaCAuGCCGAucgacgcgcCGCCGACGg -3'
miRNA:   3'- -GGCGUuCGC-GUcCGGCU---------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14687 0.72 0.143695
Target:  5'- gCCGUGAGCGCGcccucgaCGGCGCCGACGg -3'
miRNA:   3'- -GGCGUUCGCGUccg----GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 14702 0.69 0.257859
Target:  5'- gUCGCGGcGgGCGGGCCGG-GCgCGGCGAu -3'
miRNA:   3'- -GGCGUU-CgCGUCCGGCUgCG-GCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.