miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 14981 0.68 0.278205
Target:  5'- aCGCc-GCGCAGGCCGcgcAgGCCG-CAGg -3'
miRNA:   3'- gGCGuuCGCGUCCGGC---UgCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 15174 0.67 0.350163
Target:  5'- gCCGUAcuuGCGCAGGUucuCGggcaucaucugcgacACGCCGGCGg -3'
miRNA:   3'- -GGCGUu--CGCGUCCG---GC---------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15262 0.66 0.37227
Target:  5'- gCCGCAGugcuGCGCGGcGagCGucCGCCGGCGAa -3'
miRNA:   3'- -GGCGUU----CGCGUC-Cg-GCu-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 15373 0.69 0.257859
Target:  5'- aCGCccgaGCAGGUCGACGCCG-CGc -3'
miRNA:   3'- gGCGuucgCGUCCGGCUGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 15400 0.66 0.37227
Target:  5'- aUCGC--GCGCGGGCagcgGAuCGUCGACGAc -3'
miRNA:   3'- -GGCGuuCGCGUCCGg---CU-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 15691 0.69 0.232643
Target:  5'- aCCGCc-GCGC-GGCCGGaugauuccgcCGCCGGCGu -3'
miRNA:   3'- -GGCGuuCGCGuCCGGCU----------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15826 0.67 0.338652
Target:  5'- gCGCAGGUGCAGcGCUuGCGCgGcGCGAu -3'
miRNA:   3'- gGCGUUCGCGUC-CGGcUGCGgC-UGUU- -5'
28134 5' -60 NC_005887.1 + 15921 0.75 0.097283
Target:  5'- cCUGCGuuccGCGCGGGCCGgaaucgauGCGCCGGCc- -3'
miRNA:   3'- -GGCGUu---CGCGUCCGGC--------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 16023 0.69 0.232643
Target:  5'- aCUGCGacagcGGCGUGcGGCgCGugGCCGGCGc -3'
miRNA:   3'- -GGCGU-----UCGCGU-CCG-GCugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 16245 0.68 0.299809
Target:  5'- gCCgGCGAGCGCAcGGgcaCCGuCGCCGAg-- -3'
miRNA:   3'- -GG-CGUUCGCGU-CC---GGCuGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 16411 0.68 0.271284
Target:  5'- gCCGgAAGCucacGCAGGCCGAgaUCGACGGg -3'
miRNA:   3'- -GGCgUUCG----CGUCCGGCUgcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 16450 0.71 0.18346
Target:  5'- aCCGCGugcGCGCGGGCauGCGCuCGACc- -3'
miRNA:   3'- -GGCGUu--CGCGUCCGgcUGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 16503 0.72 0.155989
Target:  5'- uCgGCGAuGuCGCAGGCCGAucgcgucgcCGCCGGCGc -3'
miRNA:   3'- -GgCGUU-C-GCGUCCGGCU---------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 16855 0.66 0.363656
Target:  5'- uCCGCGAGguguacCGCGGcGCgGACGgCuCGACAGg -3'
miRNA:   3'- -GGCGUUC------GCGUC-CGgCUGC-G-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 17048 0.66 0.398934
Target:  5'- gCGCAgcGGCacGCuuGGGCgGACGCCGuCAu -3'
miRNA:   3'- gGCGU--UCG--CG--UCCGgCUGCGGCuGUu -5'
28134 5' -60 NC_005887.1 + 17656 0.69 0.264502
Target:  5'- gCGCGAGCGCGGGauugaCGggcguguucgucGCGCCGGuCAc -3'
miRNA:   3'- gGCGUUCGCGUCCg----GC------------UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 17956 0.72 0.151789
Target:  5'- gUCGCAcauauGCGCGGGCU--CGCCGGCAu -3'
miRNA:   3'- -GGCGUu----CGCGUCCGGcuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 18023 0.67 0.338652
Target:  5'- gCCGCGcgcuuacgcGCGCcGGaCUGACGgCCGACGAu -3'
miRNA:   3'- -GGCGUu--------CGCGuCC-GGCUGC-GGCUGUU- -5'
28134 5' -60 NC_005887.1 + 18043 0.75 0.100064
Target:  5'- uCCaGUcGGUGC-GGCCGAUGCCGGCGAg -3'
miRNA:   3'- -GG-CGuUCGCGuCCGGCUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 18136 0.7 0.198741
Target:  5'- aCCgGCgAAGCGCGGGCC---GCCGACGu -3'
miRNA:   3'- -GG-CG-UUCGCGUCCGGcugCGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.