miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 18368 0.67 0.338652
Target:  5'- uCCGCGuagacGGCGC--GCCGGCGCUcGCGAa -3'
miRNA:   3'- -GGCGU-----UCGCGucCGGCUGCGGcUGUU- -5'
28134 5' -60 NC_005887.1 + 18461 0.73 0.134505
Target:  5'- gCCGC-GGCGUAGGCCaucggguucgcgaGCGCCGGCGc -3'
miRNA:   3'- -GGCGuUCGCGUCCGGc------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 18691 0.7 0.21739
Target:  5'- gUGCAggaugcGGCGCAGGgcaaggacacgcacaUCGGCGCCGACu- -3'
miRNA:   3'- gGCGU------UCGCGUCC---------------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 19180 0.66 0.37227
Target:  5'- uCCGUGagcGGCGCGGGCguggagacaggCGGCGCgguuaCGACGAg -3'
miRNA:   3'- -GGCGU---UCGCGUCCG-----------GCUGCG-----GCUGUU- -5'
28134 5' -60 NC_005887.1 + 20749 0.67 0.355181
Target:  5'- aCCGCAuGCGUA-GCCacCGUCGACAAa -3'
miRNA:   3'- -GGCGUuCGCGUcCGGcuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 21507 0.66 0.408089
Target:  5'- gCCgGCAaucGGCGCAa--CGACGCCGGCu- -3'
miRNA:   3'- -GG-CGU---UCGCGUccgGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 21628 0.72 0.164259
Target:  5'- gCCGguAGCGUuGGugaauacCCGACGCCGACc- -3'
miRNA:   3'- -GGCguUCGCGuCC-------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 21814 0.66 0.398934
Target:  5'- uCCGC-GGCGCu-GCCGggcGCGCCGAa-- -3'
miRNA:   3'- -GGCGuUCGCGucCGGC---UGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 22772 0.66 0.363656
Target:  5'- aCGUGcuCGUuGGCuCGACGCCGGCGc -3'
miRNA:   3'- gGCGUucGCGuCCG-GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 22867 0.67 0.346846
Target:  5'- gCCGCGuAGCucgugaacaacaGC-GGCCG-CGCCGGCGu -3'
miRNA:   3'- -GGCGU-UCG------------CGuCCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 23204 0.69 0.257859
Target:  5'- gCCGgGGGCGgcuacuucaaGGGCC-ACGCCGACGg -3'
miRNA:   3'- -GGCgUUCGCg---------UCCGGcUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 23579 0.73 0.125162
Target:  5'- cCCGCGcguucgucAGCGC-GGCCGAacaCGUCGGCAAg -3'
miRNA:   3'- -GGCGU--------UCGCGuCCGGCU---GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 24008 0.67 0.31492
Target:  5'- gUGCGuGCGCAgacGGCCgcGAgGCCGACGu -3'
miRNA:   3'- gGCGUuCGCGU---CCGG--CUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 24436 0.67 0.330599
Target:  5'- cCUGC-AGCGC-GGCuCGugguucguCGCCGACGAg -3'
miRNA:   3'- -GGCGuUCGCGuCCG-GCu-------GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 24469 0.68 0.299809
Target:  5'- gCCGUuGGCGCGGccgaucgugucGUCGAUGCCcGGCAGg -3'
miRNA:   3'- -GGCGuUCGCGUC-----------CGGCUGCGG-CUGUU- -5'
28134 5' -60 NC_005887.1 + 24650 0.66 0.363656
Target:  5'- gCCGCGAacccauGCGCAGGUgUGAaGCUGACGg -3'
miRNA:   3'- -GGCGUU------CGCGUCCG-GCUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 24872 0.69 0.251352
Target:  5'- aCCGUccAGGCgGC-GGCCGAUGCCGcGCGc -3'
miRNA:   3'- -GGCG--UUCG-CGuCCGGCUGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 24947 0.72 0.164705
Target:  5'- aCGCGugcGCGCGGGCCGccuuGCGCgCGGCc- -3'
miRNA:   3'- gGCGUu--CGCGUCCGGC----UGCG-GCUGuu -5'
28134 5' -60 NC_005887.1 + 24976 0.67 0.330599
Target:  5'- nCCGCGAGgGaCAGGUCGGgguaguUGCCGAg-- -3'
miRNA:   3'- -GGCGUUCgC-GUCCGGCU------GCGGCUguu -5'
28134 5' -60 NC_005887.1 + 25069 0.77 0.065293
Target:  5'- gCCGCcGGCGCGaGCUGACGCuCGGCAAc -3'
miRNA:   3'- -GGCGuUCGCGUcCGGCUGCG-GCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.