miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 35472 0.7 0.220832
Target:  5'- cUCGUggGCGaAGGCCGuGCGCgGGCGc -3'
miRNA:   3'- -GGCGuuCGCgUCCGGC-UGCGgCUGUu -5'
28134 5' -60 NC_005887.1 + 35423 0.66 0.389911
Target:  5'- cCCGCGuGGUGcCGGGCgugaagcuCGugGCCGGCc- -3'
miRNA:   3'- -GGCGU-UCGC-GUCCG--------GCugCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 34767 0.73 0.139798
Target:  5'- aCCGCAAGCGCGacgacGGCCGcccgcuGCuGCuCGACAAc -3'
miRNA:   3'- -GGCGUUCGCGU-----CCGGC------UG-CG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 34424 0.7 0.21512
Target:  5'- aCGCgGGGCGCucgucuccaGCCGugGCCGGCGc -3'
miRNA:   3'- gGCG-UUCGCGuc-------CGGCugCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 34272 0.66 0.389911
Target:  5'- cUCGCGgcuuGCGCAuGCCGuCGCCGuGCGg -3'
miRNA:   3'- -GGCGUu---CGCGUcCGGCuGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 34098 0.66 0.389911
Target:  5'- uCCaGUGAGCGguGacGCCGAgCGCuCGGCAGa -3'
miRNA:   3'- -GG-CGUUCGCguC--CGGCU-GCG-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 34002 0.69 0.250709
Target:  5'- cUCGcCGAGCGCcgucggcAGGUCGACGUCGAa-- -3'
miRNA:   3'- -GGC-GUUCGCG-------UCCGGCUGCGGCUguu -5'
28134 5' -60 NC_005887.1 + 33820 0.74 0.108865
Target:  5'- aCGCGGGUGuCAGGUCGGCG-CGGCGAu -3'
miRNA:   3'- gGCGUUCGC-GUCCGGCUGCgGCUGUU- -5'
28134 5' -60 NC_005887.1 + 33592 0.69 0.264502
Target:  5'- -aGCAGGCGCucacGG-UGAuCGCCGACAAg -3'
miRNA:   3'- ggCGUUCGCGu---CCgGCU-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 33167 0.66 0.363656
Target:  5'- aCGCAAGC-CGGG-CGACcCCGACu- -3'
miRNA:   3'- gGCGUUCGcGUCCgGCUGcGGCUGuu -5'
28134 5' -60 NC_005887.1 + 32367 0.72 0.147692
Target:  5'- aCUGCGGcGCGCcGGCUGGC-CCGACGAu -3'
miRNA:   3'- -GGCGUU-CGCGuCCGGCUGcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 32318 0.79 0.04357
Target:  5'- gCCGCAGuGCGUAGgaccacacGCCGAUGCCGGCGAa -3'
miRNA:   3'- -GGCGUU-CGCGUC--------CGGCUGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 31678 0.68 0.285265
Target:  5'- gCCGUuAGC-CGGGCCGGCugguucGUCGGCAGa -3'
miRNA:   3'- -GGCGuUCGcGUCCGGCUG------CGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 31203 0.67 0.338652
Target:  5'- gCGUAuGCGCAcGGCCuGC-CCGGCAAg -3'
miRNA:   3'- gGCGUuCGCGU-CCGGcUGcGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 31129 0.66 0.406248
Target:  5'- -gGCGAGCuugccggGCAGGCCGugcgcauACGCCuGCAc -3'
miRNA:   3'- ggCGUUCG-------CGUCCGGC-------UGCGGcUGUu -5'
28134 5' -60 NC_005887.1 + 30506 0.67 0.312617
Target:  5'- aCCGCAAaacugcaucagcccGCGUAGGCgGcCGUCGGCc- -3'
miRNA:   3'- -GGCGUU--------------CGCGUCCGgCuGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 30242 0.71 0.173857
Target:  5'- gUGgAAGCuGCAGGCguuccgcgacuuCGACGCCGGCAu -3'
miRNA:   3'- gGCgUUCG-CGUCCG------------GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 30136 0.69 0.232643
Target:  5'- aUGCAAGCuuguacaaGuCGGcGCCGAUGCCGGCGu -3'
miRNA:   3'- gGCGUUCG--------C-GUC-CGGCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 29371 0.73 0.135624
Target:  5'- gCCGCGAGCgGCAugcccucGGCCcAUGCCGGCGc -3'
miRNA:   3'- -GGCGUUCG-CGU-------CCGGcUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 29002 0.67 0.346846
Target:  5'- aCCGCcAGUGCucGCUGuGCGUCGACGc -3'
miRNA:   3'- -GGCGuUCGCGucCGGC-UGCGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.