miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 24650 0.66 0.363656
Target:  5'- gCCGCGAacccauGCGCAGGUgUGAaGCUGACGg -3'
miRNA:   3'- -GGCGUU------CGCGUCCG-GCUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15174 0.67 0.350163
Target:  5'- gCCGUAcuuGCGCAGGUucuCGggcaucaucugcgacACGCCGGCGg -3'
miRNA:   3'- -GGCGUu--CGCGUCCG---GC---------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 22867 0.67 0.346846
Target:  5'- gCCGCGuAGCucgugaacaacaGC-GGCCG-CGCCGGCGu -3'
miRNA:   3'- -GGCGU-UCG------------CGuCCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 40427 0.67 0.330599
Target:  5'- gCGCGacGGCgGCAcGGCCG-CGCuCGACGg -3'
miRNA:   3'- gGCGU--UCG-CGU-CCGGCuGCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 11450 0.72 0.143695
Target:  5'- gCCGCcAGCGCuccGGCUG-CGCUGACGc -3'
miRNA:   3'- -GGCGuUCGCGu--CCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 8947 0.71 0.191987
Target:  5'- uCCGCGAGCGCGuacGGCguCGcgaucucgacgggcGCGCCGGCGu -3'
miRNA:   3'- -GGCGUUCGCGU---CCG--GC--------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 37125 0.7 0.206245
Target:  5'- gCCGUcAGCGagaAGGCCGgcaagaaggggcucaGCGCCGACc- -3'
miRNA:   3'- -GGCGuUCGCg--UCCGGC---------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 21628 0.72 0.164259
Target:  5'- gCCGguAGCGUuGGugaauacCCGACGCCGACc- -3'
miRNA:   3'- -GGCguUCGCGuCC-------GGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 42089 0.67 0.31492
Target:  5'- gUCGCGuggGGCGCGauGCCG-CGUCGACGAa -3'
miRNA:   3'- -GGCGU---UCGCGUc-CGGCuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 5765 0.67 0.322688
Target:  5'- gCCGCGaaGGCGCuGGCCG-CGaaGugGGg -3'
miRNA:   3'- -GGCGU--UCGCGuCCGGCuGCggCugUU- -5'
28134 5' -60 NC_005887.1 + 11617 0.67 0.322688
Target:  5'- aCGCAGGUGCAGagcgugcgcaauGCCGA-GCuCGACGc -3'
miRNA:   3'- gGCGUUCGCGUC------------CGGCUgCG-GCUGUu -5'
28134 5' -60 NC_005887.1 + 3075 0.67 0.330599
Target:  5'- cCUGCAGGCGCugaacGCCGACcacgGCCG-CAu -3'
miRNA:   3'- -GGCGUUCGCGuc---CGGCUG----CGGCuGUu -5'
28134 5' -60 NC_005887.1 + 36306 0.69 0.238746
Target:  5'- gCCGaucuGCGCGgcGGUCGACGCCGcGCAc -3'
miRNA:   3'- -GGCguu-CGCGU--CCGGCUGCGGC-UGUu -5'
28134 5' -60 NC_005887.1 + 13183 0.69 0.238746
Target:  5'- gCGgGAGCggucgaGCAGGCCGcCGgCCGACGu -3'
miRNA:   3'- gGCgUUCG------CGUCCGGCuGC-GGCUGUu -5'
28134 5' -60 NC_005887.1 + 30136 0.69 0.232643
Target:  5'- aUGCAAGCuuguacaaGuCGGcGCCGAUGCCGGCGu -3'
miRNA:   3'- gGCGUUCG--------C-GUC-CGGCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 15691 0.69 0.232643
Target:  5'- aCCGCc-GCGC-GGCCGGaugauuccgcCGCCGGCGu -3'
miRNA:   3'- -GGCGuuCGCGuCCGGCU----------GCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 40965 0.67 0.33784
Target:  5'- aCCGCuucGGCGCGGGCCuGAUGuacgugcCCGAg-- -3'
miRNA:   3'- -GGCGu--UCGCGUCCGG-CUGC-------GGCUguu -5'
28134 5' -60 NC_005887.1 + 15826 0.67 0.338652
Target:  5'- gCGCAGGUGCAGcGCUuGCGCgGcGCGAu -3'
miRNA:   3'- gGCGUUCGCGUC-CGGcUGCGgC-UGUU- -5'
28134 5' -60 NC_005887.1 + 24976 0.67 0.330599
Target:  5'- nCCGCGAGgGaCAGGUCGGgguaguUGCCGAg-- -3'
miRNA:   3'- -GGCGUUCgC-GUCCGGCU------GCGGCUguu -5'
28134 5' -60 NC_005887.1 + 16503 0.72 0.155989
Target:  5'- uCgGCGAuGuCGCAGGCCGAucgcgucgcCGCCGGCGc -3'
miRNA:   3'- -GgCGUU-C-GCGUCCGGCU---------GCGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.