miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28134 5' -60 NC_005887.1 + 650 0.66 0.37227
Target:  5'- gCgGCGAGCGCAcGcGCaUGAcCGCCGACc- -3'
miRNA:   3'- -GgCGUUCGCGU-C-CG-GCU-GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 10370 0.66 0.37227
Target:  5'- aCGUAcaacGGCGU--GCCGACGUCGACu- -3'
miRNA:   3'- gGCGU----UCGCGucCGGCUGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 15400 0.66 0.37227
Target:  5'- aUCGC--GCGCGGGCagcgGAuCGUCGACGAc -3'
miRNA:   3'- -GGCGuuCGCGUCCGg---CU-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 19180 0.66 0.37227
Target:  5'- uCCGUGagcGGCGCGGGCguggagacaggCGGCGCgguuaCGACGAg -3'
miRNA:   3'- -GGCGU---UCGCGUCCG-----------GCUGCG-----GCUGUU- -5'
28134 5' -60 NC_005887.1 + 15262 0.66 0.37227
Target:  5'- gCCGCAGugcuGCGCGGcGagCGucCGCCGGCGAa -3'
miRNA:   3'- -GGCGUU----CGCGUC-Cg-GCu-GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 24650 0.66 0.363656
Target:  5'- gCCGCGAacccauGCGCAGGUgUGAaGCUGACGg -3'
miRNA:   3'- -GGCGUU------CGCGUCCG-GCUgCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 22772 0.66 0.363656
Target:  5'- aCGUGcuCGUuGGCuCGACGCCGGCGc -3'
miRNA:   3'- gGCGUucGCGuCCG-GCUGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 16855 0.66 0.363656
Target:  5'- uCCGCGAGguguacCGCGGcGCgGACGgCuCGACAGg -3'
miRNA:   3'- -GGCGUUC------GCGUC-CGgCUGC-G-GCUGUU- -5'
28134 5' -60 NC_005887.1 + 33167 0.66 0.363656
Target:  5'- aCGCAAGC-CGGG-CGACcCCGACu- -3'
miRNA:   3'- gGCGUUCGcGUCCgGCUGcGGCUGuu -5'
28134 5' -60 NC_005887.1 + 7341 0.66 0.363656
Target:  5'- -aGCGGGCgGCcgGGGCCGAUGUCG-CGGu -3'
miRNA:   3'- ggCGUUCG-CG--UCCGGCUGCGGCuGUU- -5'
28134 5' -60 NC_005887.1 + 20749 0.67 0.355181
Target:  5'- aCCGCAuGCGUA-GCCacCGUCGACAAa -3'
miRNA:   3'- -GGCGUuCGCGUcCGGcuGCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 5138 0.67 0.355181
Target:  5'- cCCGCAcgGGUauGCGGGCUGAUcuuCCGGCGc -3'
miRNA:   3'- -GGCGU--UCG--CGUCCGGCUGc--GGCUGUu -5'
28134 5' -60 NC_005887.1 + 10997 0.67 0.354341
Target:  5'- gCGCGuaaucgGGCgugaGCAGGCCGgccgacgucaucuGCGCCGGCu- -3'
miRNA:   3'- gGCGU------UCG----CGUCCGGC-------------UGCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 15174 0.67 0.350163
Target:  5'- gCCGUAcuuGCGCAGGUucuCGggcaucaucugcgacACGCCGGCGg -3'
miRNA:   3'- -GGCGUu--CGCGUCCG---GC---------------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 26880 0.67 0.350163
Target:  5'- gCGCAcGCGCAGGauGAaauucagaaggcgcuCGCCGACu- -3'
miRNA:   3'- gGCGUuCGCGUCCggCU---------------GCGGCUGuu -5'
28134 5' -60 NC_005887.1 + 27217 0.67 0.346846
Target:  5'- cCCGCGcccguGGcCGUucGGCCGcgugauCGCCGACGAg -3'
miRNA:   3'- -GGCGU-----UC-GCGu-CCGGCu-----GCGGCUGUU- -5'
28134 5' -60 NC_005887.1 + 11329 0.67 0.346846
Target:  5'- gCCGCAAcCGCGacGGCCGguACGCUGAgCAc -3'
miRNA:   3'- -GGCGUUcGCGU--CCGGC--UGCGGCU-GUu -5'
28134 5' -60 NC_005887.1 + 22867 0.67 0.346846
Target:  5'- gCCGCGuAGCucgugaacaacaGC-GGCCG-CGCCGGCGu -3'
miRNA:   3'- -GGCGU-UCG------------CGuCCGGCuGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 28117 0.67 0.346846
Target:  5'- -gGguGGCGCAGcGCCugcucgaucACGCCGACGc -3'
miRNA:   3'- ggCguUCGCGUC-CGGc--------UGCGGCUGUu -5'
28134 5' -60 NC_005887.1 + 29002 0.67 0.346846
Target:  5'- aCCGCcAGUGCucGCUGuGCGUCGACGc -3'
miRNA:   3'- -GGCGuUCGCGucCGGC-UGCGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.