miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 28471 0.67 0.608623
Target:  5'- --cGcgCGCuCGGCUGCGACGuGCGcgugacgacaGCCg -3'
miRNA:   3'- cuaCuaGCG-GCUGAUGUUGC-CGC----------CGG- -5'
28135 3' -54.6 NC_005887.1 + 27653 0.68 0.586289
Target:  5'- uGUGcgCGCUGAgCUGCcgcGCGcGCGGCUu -3'
miRNA:   3'- cUACuaGCGGCU-GAUGu--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 17704 0.68 0.586289
Target:  5'- cGUGAcgGCCGGCUACAACaaGGU-GCCg -3'
miRNA:   3'- cUACUagCGGCUGAUGUUG--CCGcCGG- -5'
28135 3' -54.6 NC_005887.1 + 3719 0.68 0.586289
Target:  5'- --cGcgCGCCGACcGCGAUccgcgcaagcuGGaCGGCCg -3'
miRNA:   3'- cuaCuaGCGGCUGaUGUUG-----------CC-GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 21081 0.68 0.586289
Target:  5'- gGGUGG-CGuuGGCUugAACGGUaucGGCg -3'
miRNA:   3'- -CUACUaGCggCUGAugUUGCCG---CCGg -5'
28135 3' -54.6 NC_005887.1 + 33889 0.68 0.585177
Target:  5'- --cGAUCGCCG-CgcCGACcugacacccgcguGGUGGCCg -3'
miRNA:   3'- cuaCUAGCGGCuGauGUUG-------------CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 27193 0.68 0.575178
Target:  5'- cGUGAUCGCCGACgagucgACGaagcugaagucgACGcGCGuGUCg -3'
miRNA:   3'- cUACUAGCGGCUGa-----UGU------------UGC-CGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 16583 0.68 0.575178
Target:  5'- --cGG-CGCCGGCgGCGACGcgauCGGCCu -3'
miRNA:   3'- cuaCUaGCGGCUGaUGUUGCc---GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 2325 0.68 0.564115
Target:  5'- --aGGUCGCUGGCaucuaugGCGAucCGGCGGgCg -3'
miRNA:   3'- cuaCUAGCGGCUGa------UGUU--GCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 15665 0.68 0.564115
Target:  5'- aGAUGcgCGCCGAgCU-CGAccagcucaccgcCGcGCGGCCg -3'
miRNA:   3'- -CUACuaGCGGCU-GAuGUU------------GC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 14977 0.68 0.564115
Target:  5'- --cGAUCGCgagUGAUUGCAGCGGCa-CCg -3'
miRNA:   3'- cuaCUAGCG---GCUGAUGUUGCCGccGG- -5'
28135 3' -54.6 NC_005887.1 + 3741 0.68 0.564115
Target:  5'- --aGAUCGCCGACUuCu-CGG-GGUCu -3'
miRNA:   3'- cuaCUAGCGGCUGAuGuuGCCgCCGG- -5'
28135 3' -54.6 NC_005887.1 + 1074 0.68 0.564115
Target:  5'- ------aGCCgGugUACAgcgcgcgcACGGCGGCCg -3'
miRNA:   3'- cuacuagCGG-CugAUGU--------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 35316 0.68 0.564115
Target:  5'- -cUGcAUCGCuCcACUGCcgcgcgccGCGGCGGCCg -3'
miRNA:   3'- cuAC-UAGCG-GcUGAUGu-------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 41588 0.68 0.564115
Target:  5'- -----cUGUCGGC--CAGCGGCGGCCc -3'
miRNA:   3'- cuacuaGCGGCUGauGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 33349 0.68 0.553109
Target:  5'- gGAUGGaagugCGCCGGCU---GCGGCGGg- -3'
miRNA:   3'- -CUACUa----GCGGCUGAuguUGCCGCCgg -5'
28135 3' -54.6 NC_005887.1 + 14396 0.68 0.553109
Target:  5'- --cGAUCGCCGcguucaccuGCUuguCGGCGuCGGCCu -3'
miRNA:   3'- cuaCUAGCGGC---------UGAu--GUUGCcGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 30365 0.68 0.553109
Target:  5'- cGUGAUCgGCCuGACUGCgAACGucgugcGCGGCa -3'
miRNA:   3'- cUACUAG-CGG-CUGAUG-UUGC------CGCCGg -5'
28135 3' -54.6 NC_005887.1 + 22773 0.68 0.542169
Target:  5'- cGUGcUCGuuGGCU-CGACGccggcGCGGCCg -3'
miRNA:   3'- cUACuAGCggCUGAuGUUGC-----CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 2473 0.68 0.542169
Target:  5'- --cGAggCGCUGACgcggaucauCGACGGCGaGCCc -3'
miRNA:   3'- cuaCUa-GCGGCUGau-------GUUGCCGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.