miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 31499 0.67 0.886023
Target:  5'- ----cCGAUUGCCgcgCGCGcgGCGCGGa -3'
miRNA:   3'- cacuuGUUAAUGGa--GCGCugUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 7555 0.67 0.878101
Target:  5'- -cGAuCAGgauccgGCCUCGUGGCAgGCGu -3'
miRNA:   3'- caCUuGUUaa----UGGAGCGCUGUgCGCc -5'
28136 3' -49.7 NC_005887.1 + 31034 0.67 0.878101
Target:  5'- aGUGGGCGAaguuCCUCaCG-UACGCGGg -3'
miRNA:   3'- -CACUUGUUaau-GGAGcGCuGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 40441 0.68 0.869899
Target:  5'- ---cACGAUUuCCUCGCG-CGCGaCGGc -3'
miRNA:   3'- cacuUGUUAAuGGAGCGCuGUGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 17097 0.68 0.861425
Target:  5'- ---cGCAA-UACCUCGaCGACGC-CGGg -3'
miRNA:   3'- cacuUGUUaAUGGAGC-GCUGUGcGCC- -5'
28136 3' -49.7 NC_005887.1 + 39760 0.68 0.861425
Target:  5'- aUGAACAAUgagACUcuggUCGCGGCGCucGCGc -3'
miRNA:   3'- cACUUGUUAa--UGG----AGCGCUGUG--CGCc -5'
28136 3' -49.7 NC_005887.1 + 9928 0.68 0.843693
Target:  5'- -cGAACcg-UACgaugUGCGGCGCGCGGc -3'
miRNA:   3'- caCUUGuuaAUGga--GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 1034 0.68 0.843693
Target:  5'- cGUGucgGCGAUcACCUCGUGcuGCACGCc- -3'
miRNA:   3'- -CACu--UGUUAaUGGAGCGC--UGUGCGcc -5'
28136 3' -49.7 NC_005887.1 + 4648 0.68 0.843693
Target:  5'- -cGAuCAAggAUCUCaGCGACGCGCa- -3'
miRNA:   3'- caCUuGUUaaUGGAG-CGCUGUGCGcc -5'
28136 3' -49.7 NC_005887.1 + 6797 0.68 0.833518
Target:  5'- -gGGACAucgGCCUcacgcugCGCGACugGCGc -3'
miRNA:   3'- caCUUGUuaaUGGA-------GCGCUGugCGCc -5'
28136 3' -49.7 NC_005887.1 + 12417 0.69 0.824982
Target:  5'- -aGGGCAAcgACaC-CGCGGCGCGCGc -3'
miRNA:   3'- caCUUGUUaaUG-GaGCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 31079 0.69 0.815285
Target:  5'- -cGAAUAGUgGCCUgcgcCGCGcCACGCGa -3'
miRNA:   3'- caCUUGUUAaUGGA----GCGCuGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 15590 0.69 0.805376
Target:  5'- cGUG-ACGA--ACCUCGCGACGuC-CGGa -3'
miRNA:   3'- -CACuUGUUaaUGGAGCGCUGU-GcGCC- -5'
28136 3' -49.7 NC_005887.1 + 8180 0.69 0.805376
Target:  5'- -cGAACAGcggcGCCUCgGCGA-GCGCGGc -3'
miRNA:   3'- caCUUGUUaa--UGGAG-CGCUgUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 29805 0.69 0.805376
Target:  5'- -cGGGCAAgaccgUGCacgCGCGGCGCGUGa -3'
miRNA:   3'- caCUUGUUa----AUGga-GCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 16823 0.69 0.795266
Target:  5'- cGUGGACAAU--CC-CGCGAUggaGCGCGa -3'
miRNA:   3'- -CACUUGUUAauGGaGCGCUG---UGCGCc -5'
28136 3' -49.7 NC_005887.1 + 26676 0.69 0.795266
Target:  5'- aUGAACAucUGCCguuccaugUCGCGAUacagccgucGCGCGGc -3'
miRNA:   3'- cACUUGUuaAUGG--------AGCGCUG---------UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 20750 0.69 0.794245
Target:  5'- cGUGAcCAAUgcacgcGCCggcaacgUUGCGACACGUGGc -3'
miRNA:   3'- -CACUuGUUAa-----UGG-------AGCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8191 0.69 0.783929
Target:  5'- -cGGGCAGUucgaugucUACC-CGCGcaccgacACGCGCGGg -3'
miRNA:   3'- caCUUGUUA--------AUGGaGCGC-------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41016 0.7 0.763861
Target:  5'- uGUGGACAGgcgucuaCUgGCGcCGCGCGGu -3'
miRNA:   3'- -CACUUGUUaaug---GAgCGCuGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.