miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 5' -57.3 NC_005887.1 + 17751 0.67 0.530924
Target:  5'- cGGCCGCGcggCUGa-UGGCGCCCGGu- -3'
miRNA:   3'- -CCGGUGCaa-GGUgcACUGCGGGCUcg -5'
28136 5' -57.3 NC_005887.1 + 14545 0.67 0.530924
Target:  5'- cGGgCACGaUCUGCGcGAgGCCCGAc- -3'
miRNA:   3'- -CCgGUGCaAGGUGCaCUgCGGGCUcg -5'
28136 5' -57.3 NC_005887.1 + 15562 0.67 0.530924
Target:  5'- uGGCCgGCG-UCCAUcUGACGCgCG-GCc -3'
miRNA:   3'- -CCGG-UGCaAGGUGcACUGCGgGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 34463 0.67 0.520429
Target:  5'- cGUCuuCGUUCgCGCGgcucGCGCCCGAGa -3'
miRNA:   3'- cCGGu-GCAAG-GUGCac--UGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 8929 0.67 0.510017
Target:  5'- -uUCGCGaUCCGCGcGACGCa-GAGCg -3'
miRNA:   3'- ccGGUGCaAGGUGCaCUGCGggCUCG- -5'
28136 5' -57.3 NC_005887.1 + 10655 0.67 0.510017
Target:  5'- gGGCCAaCGUUCgACGacaACGauCUCGAGCa -3'
miRNA:   3'- -CCGGU-GCAAGgUGCac-UGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 15087 0.67 0.499692
Target:  5'- cGCCgGCGUgUCGCagaUGAUGCCCGAGa -3'
miRNA:   3'- cCGG-UGCAaGGUGc--ACUGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 30237 0.67 0.499692
Target:  5'- aGCUgcagGCGUUCCGCGacuucGACGCCgGcaucGGCg -3'
miRNA:   3'- cCGG----UGCAAGGUGCa----CUGCGGgC----UCG- -5'
28136 5' -57.3 NC_005887.1 + 24245 0.67 0.479329
Target:  5'- uGGCCACGUgccggcagcagCCACGgcgaGuCGCCgGAuaGCg -3'
miRNA:   3'- -CCGGUGCAa----------GGUGCa---CuGCGGgCU--CG- -5'
28136 5' -57.3 NC_005887.1 + 42000 0.68 0.458395
Target:  5'- cGGCCuGCGgcCCACGUcgagugucgccgcGGCGCgCGAuGCg -3'
miRNA:   3'- -CCGG-UGCaaGGUGCA-------------CUGCGgGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 18360 0.68 0.439884
Target:  5'- gGGCgAC-UUCCGCGUagacGGCGCgCCG-GCg -3'
miRNA:   3'- -CCGgUGcAAGGUGCA----CUGCG-GGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 11082 0.68 0.430313
Target:  5'- uGCUcaaACGaUUCCGCGUGGCGCaUCG-GCu -3'
miRNA:   3'- cCGG---UGC-AAGGUGCACUGCG-GGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 8565 0.68 0.429363
Target:  5'- cGCCACGccgUuacgcgacucgagCCACGUGuCGUcgCCGAGCg -3'
miRNA:   3'- cCGGUGCa--A-------------GGUGCACuGCG--GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 34528 0.68 0.420866
Target:  5'- aGGCCGCa----GCG-GAUGCCCGGGUu -3'
miRNA:   3'- -CCGGUGcaaggUGCaCUGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 17240 0.69 0.411545
Target:  5'- cGGCCGCGUUCgCGCGcucccACGCCUc-GCg -3'
miRNA:   3'- -CCGGUGCAAG-GUGCac---UGCGGGcuCG- -5'
28136 5' -57.3 NC_005887.1 + 27207 0.69 0.393293
Target:  5'- uGGCCGuuCGg-CCGCGUGAuCGCCgaCGAGUc -3'
miRNA:   3'- -CCGGU--GCaaGGUGCACU-GCGG--GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 25568 0.69 0.393293
Target:  5'- cGCCACccgCCGCGccauCGUCCGAGCc -3'
miRNA:   3'- cCGGUGcaaGGUGCacu-GCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 37682 0.69 0.366919
Target:  5'- cGGCCugGUguaUgCGCGUGACGCgcgcacugaCGAGa -3'
miRNA:   3'- -CCGGugCA---AgGUGCACUGCGg--------GCUCg -5'
28136 5' -57.3 NC_005887.1 + 30275 0.7 0.350026
Target:  5'- aGGCCGCGacgCgGCGUGGCuGgCCG-GCg -3'
miRNA:   3'- -CCGGUGCaa-GgUGCACUG-CgGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 12355 0.7 0.325738
Target:  5'- cGGCCAgGcggUgACGUGGCaGgCCGAGCa -3'
miRNA:   3'- -CCGGUgCaa-GgUGCACUG-CgGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.