Results 21 - 40 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 3' | -64 | NC_005887.1 | + | 25084 | 0.73 | 0.078687 |
Target: 5'- aCCGgCUgGCCGgcgGCCGCCGGCGCgaGCUGa -3' miRNA: 3'- -GGUgGGgCGGU---UGGUGGCCGCG--CGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 16231 | 0.73 | 0.0831 |
Target: 5'- uUCGCCUcgauCGCUcGCgCACuCGGCGCGCCGg -3' miRNA: 3'- -GGUGGG----GCGGuUG-GUG-GCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 3471 | 0.73 | 0.080865 |
Target: 5'- gCCGCCCUGCCAGCgGuaGcGCGCGgCGa -3' miRNA: 3'- -GGUGGGGCGGUUGgUggC-CGCGCgGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 5142 | 0.73 | 0.090164 |
Target: 5'- aCCGCgCUGCCcgaCGUCGGCGCGCCGc -3' miRNA: 3'- -GGUGgGGCGGuugGUGGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 25014 | 0.73 | 0.090164 |
Target: 5'- cUCGCgCCGgCGGCCGCCGGC-CaGCCGg -3' miRNA: 3'- -GGUGgGGCgGUUGGUGGCCGcG-CGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 7424 | 0.73 | 0.085394 |
Target: 5'- cCCGCCgCCGCCucguuuGgCGCUGGCGUGCgCGu -3' miRNA: 3'- -GGUGG-GGCGGu-----UgGUGGCCGCGCG-GC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 36242 | 0.73 | 0.080865 |
Target: 5'- aCCACUUCGCCAGCUcguGCgCGGCcGUGCCu -3' miRNA: 3'- -GGUGGGGCGGUUGG---UG-GCCG-CGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 29568 | 0.73 | 0.085394 |
Target: 5'- aCGCgCCCGCCGucgagGCCGCCGGCuacgacaucGUGCUGu -3' miRNA: 3'- gGUG-GGGCGGU-----UGGUGGCCG---------CGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 35750 | 0.72 | 0.097795 |
Target: 5'- aCCGCgaaGCCGGCCGCCGaucGCGCGCUGc -3' miRNA: 3'- -GGUGgggCGGUUGGUGGC---CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 42210 | 0.72 | 0.095186 |
Target: 5'- uUCGCCCCGCUGcUCugCGaauGCGCGCCa -3' miRNA: 3'- -GGUGGGGCGGUuGGugGC---CGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 32285 | 0.72 | 0.092643 |
Target: 5'- uCCACacggggcgaUCGUCgGGCCAgCCGGCGCGCCGc -3' miRNA: 3'- -GGUGg--------GGCGG-UUGGU-GGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 28572 | 0.72 | 0.103218 |
Target: 5'- aCCGCaUCGUCAucuucCCGCCGGCGCGCg- -3' miRNA: 3'- -GGUGgGGCGGUu----GGUGGCCGCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 7177 | 0.72 | 0.103218 |
Target: 5'- gCCGCCCCGCCucguuaGACCAcgcgcgauuCCGuguucaggaGCGCGUCGg -3' miRNA: 3'- -GGUGGGGCGG------UUGGU---------GGC---------CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 4623 | 0.72 | 0.100472 |
Target: 5'- gCCGCggCGCCGgugGCCGCCGGCGCGaUCa -3' miRNA: 3'- -GGUGggGCGGU---UGGUGGCCGCGC-GGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 5238 | 0.72 | 0.092392 |
Target: 5'- aCACCUCgacgcguGCCAucagcAUCAgCGGCGCGCCGa -3' miRNA: 3'- gGUGGGG-------CGGU-----UGGUgGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 18449 | 0.72 | 0.092643 |
Target: 5'- gCCAUCggguUCGCgAG-CGCCGGCGCGCCGu -3' miRNA: 3'- -GGUGG----GGCGgUUgGUGGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 9698 | 0.72 | 0.092643 |
Target: 5'- aCACCgacaUCGCgAGCCACCGGuCGCGCa- -3' miRNA: 3'- gGUGG----GGCGgUUGGUGGCC-GCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 31469 | 0.72 | 0.094929 |
Target: 5'- cCUACCCCGCUGaaccacggcacgcACCgcuaGCCGaGCGCGUCGa -3' miRNA: 3'- -GGUGGGGCGGU-------------UGG----UGGC-CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 9337 | 0.72 | 0.105749 |
Target: 5'- gUCGCCgUGCCGACCGCCGugcacagauagacGCGauCGCCGa -3' miRNA: 3'- -GGUGGgGCGGUUGGUGGC-------------CGC--GCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 982 | 0.72 | 0.108923 |
Target: 5'- aUCGCCgacacgcgcaaUUGCCGGCCGCCGuGCGCGCg- -3' miRNA: 3'- -GGUGG-----------GGCGGUUGGUGGC-CGCGCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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