miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 2398 0.7 0.132693
Target:  5'- -gAUCCUGCguGCCGCUGGCuucgaggcgaagcccGCGCCGa -3'
miRNA:   3'- ggUGGGGCGguUGGUGGCCG---------------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 40856 0.7 0.134817
Target:  5'- uCCA-CCgGCgaAGCCGCCGcGCGCGUCGa -3'
miRNA:   3'- -GGUgGGgCGg-UUGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 3704 0.7 0.134817
Target:  5'- aCCACgCCGUCGA--GCC-GCGCGCCGa -3'
miRNA:   3'- -GGUGgGGCGGUUggUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13468 0.7 0.138427
Target:  5'- gCgGCUugCCGCCGACguCCGcCGCGCCGg -3'
miRNA:   3'- -GgUGG--GGCGGUUGguGGCcGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 4111 0.7 0.142126
Target:  5'- aCCAuuuCCUCGCCcuugucguucaGGCCACCccaauucaGCGCGCCGg -3'
miRNA:   3'- -GGU---GGGGCGG-----------UUGGUGGc-------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 32744 0.7 0.153769
Target:  5'- gCgGCgCUCGCguGCgCGCCGGCGCGCg- -3'
miRNA:   3'- -GgUG-GGGCGguUG-GUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 8467 0.7 0.149795
Target:  5'- gCGCCCgGCgCAACCGCuCGGCGaCGacaCGu -3'
miRNA:   3'- gGUGGGgCG-GUUGGUG-GCCGC-GCg--GC- -5'
28138 3' -64 NC_005887.1 + 25654 0.7 0.145914
Target:  5'- -aGCUucaCCGCCAGCCGCa-GCGCGUCGc -3'
miRNA:   3'- ggUGG---GGCGGUUGGUGgcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21322 0.7 0.142126
Target:  5'- cCCACCgCGCCGACCGCau-CG-GCCGg -3'
miRNA:   3'- -GGUGGgGCGGUUGGUGgccGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 40760 0.7 0.138427
Target:  5'- uCgGCuCCUGCCAGCCgugCGcGCGCGCCa -3'
miRNA:   3'- -GgUG-GGGCGGUUGGug-GC-CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 25563 0.7 0.134817
Target:  5'- cCCGCCgCGCCAucguccgaGCCGCCGcUGCGuuGu -3'
miRNA:   3'- -GGUGGgGCGGU--------UGGUGGCcGCGCggC- -5'
28138 3' -64 NC_005887.1 + 32491 0.7 0.131294
Target:  5'- aUCGCCgCCgGCCAcaucGCCGCCGGCcaCGUCGa -3'
miRNA:   3'- -GGUGG-GG-CGGU----UGGUGGCCGc-GCGGC- -5'
28138 3' -64 NC_005887.1 + 13381 0.7 0.142126
Target:  5'- gCGCUCgCGCUGAagGCCGGCGCGgCGg -3'
miRNA:   3'- gGUGGG-GCGGUUggUGGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 41273 0.7 0.134817
Target:  5'- -gGCgCCGUCGACCugCgcacgGGCGCGCUGc -3'
miRNA:   3'- ggUGgGGCGGUUGGugG-----CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 30359 0.7 0.131294
Target:  5'- -uGCCCCgauGCCGagcucgguguACCGCuCGGCGuCGCCGu -3'
miRNA:   3'- ggUGGGG---CGGU----------UGGUG-GCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 533 0.69 0.179677
Target:  5'- ---aCgCGUCGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- ggugGgGCGGUUGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 22860 0.69 0.175105
Target:  5'- aCCAUCgacggCCGCCGGCCGCUaucagauccucGCGCGCUGg -3'
miRNA:   3'- -GGUGG-----GGCGGUUGGUGGc----------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21645 0.69 0.157839
Target:  5'- aUACCCgaCGCCGACCaaucugACgGGCGUGUCGc -3'
miRNA:   3'- gGUGGG--GCGGUUGG------UGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21806 0.69 0.162005
Target:  5'- aCACgacgUCCGCgGcGCUGCCgGGCGCGCCGa -3'
miRNA:   3'- gGUG----GGGCGgU-UGGUGG-CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 5418 0.69 0.175105
Target:  5'- gCgGCgCCG-CAGCgACCGGCGCGaCCa -3'
miRNA:   3'- -GgUGgGGCgGUUGgUGGCCGCGC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.