miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 982 0.72 0.108923
Target:  5'- aUCGCCgacacgcgcaaUUGCCGGCCGCCGuGCGCGCg- -3'
miRNA:   3'- -GGUGG-----------GGCGGUUGGUGGC-CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 34359 0.71 0.110691
Target:  5'- gCCGCCCgcaGUCAGCCGCaCGGCGacggcaugcgcaaGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUUGGUG-GCCGCg------------CGGC- -5'
28138 3' -64 NC_005887.1 + 14680 0.71 0.111885
Target:  5'- gCUGCCCCGCaCGAUCgggcucgucgcgGCgGGCGgGCCGg -3'
miRNA:   3'- -GGUGGGGCG-GUUGG------------UGgCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 4513 0.71 0.114922
Target:  5'- gUCugCUCGCCGACUACggCGGCGUcCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGGUG--GCCGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 14975 0.71 0.117094
Target:  5'- aCGCCUaCGCCGcgcaggccgcgcagGCCGCaGGCGUGCCGc -3'
miRNA:   3'- gGUGGG-GCGGU--------------UGGUGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 41670 0.71 0.117721
Target:  5'- -gGCCgCGCCGGCCGCCgcaccugGGC-CGCCGc -3'
miRNA:   3'- ggUGGgGCGGUUGGUGG-------CCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 39784 0.71 0.118036
Target:  5'- gCGCUCgCGCCGAUCGuuGcGCGCGUCGu -3'
miRNA:   3'- gGUGGG-GCGGUUGGUggC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11626 0.71 0.118036
Target:  5'- cCCgAUUCCG-CGACCGCCGcgcgcuGCGCGCCGa -3'
miRNA:   3'- -GG-UGGGGCgGUUGGUGGC------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 2923 0.71 0.118036
Target:  5'- aCGCCgCCGCCAAgCugCGcaaGCGCCGc -3'
miRNA:   3'- gGUGG-GGCGGUUgGugGCcg-CGCGGC- -5'
28138 3' -64 NC_005887.1 + 40132 0.71 0.119304
Target:  5'- cCCGCCCCGCCGgacgaucggaacgguAUCgggcguagGCCGGC-CGCCu -3'
miRNA:   3'- -GGUGGGGCGGU---------------UGG--------UGGCCGcGCGGc -5'
28138 3' -64 NC_005887.1 + 15691 0.71 0.121229
Target:  5'- aCCGCCgCGCgGccggaugauuccGCCGCCGGCGUGaaGg -3'
miRNA:   3'- -GGUGGgGCGgU------------UGGUGGCCGCGCggC- -5'
28138 3' -64 NC_005887.1 + 14778 0.71 0.122528
Target:  5'- aCCACCUCGCCGACCagaucaacccgcuggACCcgaucaaucuGGCG-GCCGc -3'
miRNA:   3'- -GGUGGGGCGGUUGG---------------UGG----------CCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 33747 0.71 0.123511
Target:  5'- aUCAgCgCGCCGGCCuucacgagcaucugGCgCGGCGUGCCGg -3'
miRNA:   3'- -GGUgGgGCGGUUGG--------------UG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11717 0.71 0.124502
Target:  5'- aUCGCUUCGCC-GCgCGCaCGGCGCGCaCGa -3'
miRNA:   3'- -GGUGGGGCGGuUG-GUG-GCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 21499 0.71 0.127856
Target:  5'- gCAUCgCCGCCGGCaAUCGGCGCaacgacGCCGg -3'
miRNA:   3'- gGUGG-GGCGGUUGgUGGCCGCG------CGGC- -5'
28138 3' -64 NC_005887.1 + 26256 0.71 0.127856
Target:  5'- gCCGCCCCGuuuucaucuacCCGAUCAUCGcGCGCGacaCGa -3'
miRNA:   3'- -GGUGGGGC-----------GGUUGGUGGC-CGCGCg--GC- -5'
28138 3' -64 NC_005887.1 + 12593 0.71 0.127856
Target:  5'- gCCgACCCgGCCGcgaCGCuCGGCGUGCUGa -3'
miRNA:   3'- -GG-UGGGgCGGUug-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 30359 0.7 0.131294
Target:  5'- -uGCCCCgauGCCGagcucgguguACCGCuCGGCGuCGCCGu -3'
miRNA:   3'- ggUGGGG---CGGU----------UGGUG-GCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 32491 0.7 0.131294
Target:  5'- aUCGCCgCCgGCCAcaucGCCGCCGGCcaCGUCGa -3'
miRNA:   3'- -GGUGG-GG-CGGU----UGGUGGCCGc-GCGGC- -5'
28138 3' -64 NC_005887.1 + 2398 0.7 0.132693
Target:  5'- -gAUCCUGCguGCCGCUGGCuucgaggcgaagcccGCGCCGa -3'
miRNA:   3'- ggUGGGGCGguUGGUGGCCG---------------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.