Results 61 - 80 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28138 | 3' | -64 | NC_005887.1 | + | 41273 | 0.7 | 0.134817 |
Target: 5'- -gGCgCCGUCGACCugCgcacgGGCGCGCUGc -3' miRNA: 3'- ggUGgGGCGGUUGGugG-----CCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 3704 | 0.7 | 0.134817 |
Target: 5'- aCCACgCCGUCGA--GCC-GCGCGCCGa -3' miRNA: 3'- -GGUGgGGCGGUUggUGGcCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 40856 | 0.7 | 0.134817 |
Target: 5'- uCCA-CCgGCgaAGCCGCCGcGCGCGUCGa -3' miRNA: 3'- -GGUgGGgCGg-UUGGUGGC-CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 25563 | 0.7 | 0.134817 |
Target: 5'- cCCGCCgCGCCAucguccgaGCCGCCGcUGCGuuGu -3' miRNA: 3'- -GGUGGgGCGGU--------UGGUGGCcGCGCggC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 27970 | 0.7 | 0.138427 |
Target: 5'- aUCGCuCuuGCC-GCCGCCGGCucGgGCCGa -3' miRNA: 3'- -GGUG-GggCGGuUGGUGGCCG--CgCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13468 | 0.7 | 0.138427 |
Target: 5'- gCgGCUugCCGCCGACguCCGcCGCGCCGg -3' miRNA: 3'- -GgUGG--GGCGGUUGguGGCcGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 40760 | 0.7 | 0.138427 |
Target: 5'- uCgGCuCCUGCCAGCCgugCGcGCGCGCCa -3' miRNA: 3'- -GgUG-GGGCGGUUGGug-GC-CGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 21322 | 0.7 | 0.142126 |
Target: 5'- cCCACCgCGCCGACCGCau-CG-GCCGg -3' miRNA: 3'- -GGUGGgGCGGUUGGUGgccGCgCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13381 | 0.7 | 0.142126 |
Target: 5'- gCGCUCgCGCUGAagGCCGGCGCGgCGg -3' miRNA: 3'- gGUGGG-GCGGUUggUGGCCGCGCgGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 4111 | 0.7 | 0.142126 |
Target: 5'- aCCAuuuCCUCGCCcuugucguucaGGCCACCccaauucaGCGCGCCGg -3' miRNA: 3'- -GGU---GGGGCGG-----------UUGGUGGc-------CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 25654 | 0.7 | 0.145914 |
Target: 5'- -aGCUucaCCGCCAGCCGCa-GCGCGUCGc -3' miRNA: 3'- ggUGG---GGCGGUUGGUGgcCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 33444 | 0.7 | 0.145914 |
Target: 5'- cUCAUCCUGC---CCGCCGGCGCGUg- -3' miRNA: 3'- -GGUGGGGCGguuGGUGGCCGCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 23074 | 0.7 | 0.149795 |
Target: 5'- aCCGCCUCGCagaAGCgACCGGCGuCGaUCa -3' miRNA: 3'- -GGUGGGGCGg--UUGgUGGCCGC-GC-GGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 8467 | 0.7 | 0.149795 |
Target: 5'- gCGCCCgGCgCAACCGCuCGGCGaCGacaCGu -3' miRNA: 3'- gGUGGGgCG-GUUGGUG-GCCGC-GCg--GC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 32744 | 0.7 | 0.153769 |
Target: 5'- gCgGCgCUCGCguGCgCGCCGGCGCGCg- -3' miRNA: 3'- -GgUG-GGGCGguUG-GUGGCCGCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 21645 | 0.69 | 0.157839 |
Target: 5'- aUACCCgaCGCCGACCaaucugACgGGCGUGUCGc -3' miRNA: 3'- gGUGGG--GCGGUUGG------UGgCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 16544 | 0.69 | 0.157839 |
Target: 5'- aCCAgCCCGCCGgauccuGCCGCgCGGUcgaGCGCa- -3' miRNA: 3'- -GGUgGGGCGGU------UGGUG-GCCG---CGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 3075 | 0.69 | 0.162005 |
Target: 5'- cCCGCggCGCUGGCCGCaGGCGCGuuGa -3' miRNA: 3'- -GGUGggGCGGUUGGUGgCCGCGCggC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 21806 | 0.69 | 0.162005 |
Target: 5'- aCACgacgUCCGCgGcGCUGCCgGGCGCGCCGa -3' miRNA: 3'- gGUG----GGGCGgU-UGGUGG-CCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 27845 | 0.69 | 0.162005 |
Target: 5'- gCGCCgUCGUCAuggcgcucuACCucGCCGGCGCGCuCGg -3' miRNA: 3'- gGUGG-GGCGGU---------UGG--UGGCCGCGCG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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