miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 2982 0.68 0.206231
Target:  5'- uCCACguccgucguucuucgUCCGUCAacgcGCCugCGGCcaGCGCCGc -3'
miRNA:   3'- -GGUG---------------GGGCGGU----UGGugGCCG--CGCGGC- -5'
28138 3' -64 NC_005887.1 + 28358 0.68 0.204153
Target:  5'- gUCGCCacgaCGCUGcGCgCGCuCGGCGUGCCGa -3'
miRNA:   3'- -GGUGGg---GCGGU-UG-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 29912 0.68 0.204153
Target:  5'- cCCACUCC-CacauGCCGCgGGCcucGCGCCGa -3'
miRNA:   3'- -GGUGGGGcGgu--UGGUGgCCG---CGCGGC- -5'
28138 3' -64 NC_005887.1 + 17741 0.68 0.204153
Target:  5'- aCGCUCgGCaCGGCCGCgCGGCugaugGCGCCc -3'
miRNA:   3'- gGUGGGgCG-GUUGGUG-GCCG-----CGCGGc -5'
28138 3' -64 NC_005887.1 + 15909 0.68 0.199037
Target:  5'- gCAgCUgGCCGACCugcguuCCGcGCGgGCCGg -3'
miRNA:   3'- gGUgGGgCGGUUGGu-----GGC-CGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 31008 0.68 0.199037
Target:  5'- -gGCgCCGaCAucACCGCCGaGCGCGCUGu -3'
miRNA:   3'- ggUGgGGCgGU--UGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18002 0.68 0.194033
Target:  5'- aCAgCCUGaCCGaaugggACCGCCGcgcgcuuacGCGCGCCGg -3'
miRNA:   3'- gGUgGGGC-GGU------UGGUGGC---------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 10343 0.68 0.194033
Target:  5'- uCCGCCUucuacguggaCGCCGguAUCACguacaaCGGCGUGCCGa -3'
miRNA:   3'- -GGUGGG----------GCGGU--UGGUG------GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11389 0.68 0.194033
Target:  5'- gCAgCCggagCGCUGGCgGCCGGCGcCGCCa -3'
miRNA:   3'- gGUgGG----GCGGUUGgUGGCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 15066 0.68 0.189139
Target:  5'- gCAggUgUCGCCGaagggaGCCGCCGGCGUGUCGc -3'
miRNA:   3'- gGU--GgGGCGGU------UGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 12113 0.68 0.189139
Target:  5'- gCCGCgCagaagCGCCAggacgagcagGCCGCCGucGCGCGCCa -3'
miRNA:   3'- -GGUGgG-----GCGGU----------UGGUGGC--CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 35402 0.68 0.189139
Target:  5'- -aGCUCgugGCCGGCCGCCgcGGCGCGCgGc -3'
miRNA:   3'- ggUGGGg--CGGUUGGUGG--CCGCGCGgC- -5'
28138 3' -64 NC_005887.1 + 13697 0.68 0.184354
Target:  5'- gCUGCUCgGCUgagugcGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- -GGUGGGgCGG------UUGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 26399 0.68 0.184354
Target:  5'- gCACCCgGCCAG-CGCCGGCcacgGCCu -3'
miRNA:   3'- gGUGGGgCGGUUgGUGGCCGcg--CGGc -5'
28138 3' -64 NC_005887.1 + 26315 0.68 0.184354
Target:  5'- gCCGUCCUGCagguucaGGCCgugGCCGGCGCugGCCGg -3'
miRNA:   3'- -GGUGGGGCGg------UUGG---UGGCCGCG--CGGC- -5'
28138 3' -64 NC_005887.1 + 533 0.69 0.179677
Target:  5'- ---aCgCGUCGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- ggugGgGCGGUUGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18624 0.69 0.175105
Target:  5'- gCAUgUCGCCcGCgaaGCCGGCGCcGCCGc -3'
miRNA:   3'- gGUGgGGCGGuUGg--UGGCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 5418 0.69 0.175105
Target:  5'- gCgGCgCCG-CAGCgACCGGCGCGaCCa -3'
miRNA:   3'- -GgUGgGGCgGUUGgUGGCCGCGC-GGc -5'
28138 3' -64 NC_005887.1 + 22860 0.69 0.175105
Target:  5'- aCCAUCgacggCCGCCGGCCGCUaucagauccucGCGCGCUGg -3'
miRNA:   3'- -GGUGG-----GGCGGUUGGUGGc----------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18082 0.69 0.169316
Target:  5'- aCGCCCggcaaguauggggaCGCCGAauaccugaCACCGGaCGCGCUGu -3'
miRNA:   3'- gGUGGG--------------GCGGUUg-------GUGGCC-GCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.