miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 10001 0.67 0.225769
Target:  5'- gUCACgaagaUCGCCGACCACaucacgcgCGGcCGCGCUGg -3'
miRNA:   3'- -GGUGg----GGCGGUUGGUG--------GCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 10343 0.68 0.194033
Target:  5'- uCCGCCUucuacguggaCGCCGguAUCACguacaaCGGCGUGCCGa -3'
miRNA:   3'- -GGUGGG----------GCGGU--UGGUG------GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 10794 0.68 0.209383
Target:  5'- gCUACCagaaCGaCCAACCguuGCCGGUGaCGCUGc -3'
miRNA:   3'- -GGUGGg---GC-GGUUGG---UGGCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 10888 0.67 0.220189
Target:  5'- aCAUCCUGUCGgugcACCugcaGCCGGCGCagaugacgucgGCCGg -3'
miRNA:   3'- gGUGGGGCGGU----UGG----UGGCCGCG-----------CGGC- -5'
28138 3' -64 NC_005887.1 + 11180 0.66 0.255483
Target:  5'- gCGCCUCgGCCAGCUucgcgcgcaccaGCCGaUGCGCCa -3'
miRNA:   3'- gGUGGGG-CGGUUGG------------UGGCcGCGCGGc -5'
28138 3' -64 NC_005887.1 + 11292 0.67 0.220189
Target:  5'- uCUACCuCUGCucgCAGCgGCCGGCucggcagcgaGCGCCGc -3'
miRNA:   3'- -GGUGG-GGCG---GUUGgUGGCCG----------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 11389 0.68 0.194033
Target:  5'- gCAgCCggagCGCUGGCgGCCGGCGcCGCCa -3'
miRNA:   3'- gGUgGG----GCGGUUGgUGGCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 11456 0.74 0.076566
Target:  5'- gCGCCggCCGCCAGCgCuCCGGCuGCGCUGa -3'
miRNA:   3'- gGUGG--GGCGGUUG-GuGGCCG-CGCGGC- -5'
28138 3' -64 NC_005887.1 + 11626 0.71 0.118036
Target:  5'- cCCgAUUCCG-CGACCGCCGcgcgcuGCGCGCCGa -3'
miRNA:   3'- -GG-UGGGGCgGUUGGUGGC------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11717 0.71 0.124502
Target:  5'- aUCGCUUCGCC-GCgCGCaCGGCGCGCaCGa -3'
miRNA:   3'- -GGUGGGGCGGuUG-GUG-GCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 11846 0.66 0.253614
Target:  5'- gCCGCCgagcagcgaggacgCCGCCGAgaucCCACCGGUGaucauGCUGu -3'
miRNA:   3'- -GGUGG--------------GGCGGUU----GGUGGCCGCg----CGGC- -5'
28138 3' -64 NC_005887.1 + 11962 0.79 0.028986
Target:  5'- -aGCCCCGCCGugaaGuuGCCGGCGCuGCCGa -3'
miRNA:   3'- ggUGGGGCGGU----UggUGGCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 12113 0.68 0.189139
Target:  5'- gCCGCgCagaagCGCCAggacgagcagGCCGCCGucGCGCGCCa -3'
miRNA:   3'- -GGUGgG-----GCGGU----------UGGUGGC--CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 12593 0.71 0.127856
Target:  5'- gCCgACCCgGCCGcgaCGCuCGGCGUGCUGa -3'
miRNA:   3'- -GG-UGGGgCGGUug-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 12982 0.66 0.255483
Target:  5'- aCGCgCUCGCgAA--ACCGGCGUGCUGg -3'
miRNA:   3'- gGUG-GGGCGgUUggUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13381 0.7 0.142126
Target:  5'- gCGCUCgCGCUGAagGCCGGCGCGgCGg -3'
miRNA:   3'- gGUGGG-GCGGUUggUGGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 13402 0.67 0.214188
Target:  5'- uCCACUgCGCgGcgagauccgcgauGCgGCCGGCGuUGCCGa -3'
miRNA:   3'- -GGUGGgGCGgU-------------UGgUGGCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 13468 0.7 0.138427
Target:  5'- gCgGCUugCCGCCGACguCCGcCGCGCCGg -3'
miRNA:   3'- -GgUGG--GGCGGUUGguGGCcGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13518 0.66 0.255483
Target:  5'- gCGCgCCCGUCAggaugaacguGCUgAgCGGUGCGCCGc -3'
miRNA:   3'- gGUG-GGGCGGU----------UGG-UgGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13697 0.68 0.184354
Target:  5'- gCUGCUCgGCUgagugcGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- -GGUGGGgCGG------UUGGUGGcCGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.