miRNA display CGI


Results 21 - 40 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 35402 0.68 0.189139
Target:  5'- -aGCUCgugGCCGGCCGCCgcGGCGCGCgGc -3'
miRNA:   3'- ggUGGGg--CGGUUGGUGG--CCGCGCGgC- -5'
28138 3' -64 NC_005887.1 + 35130 0.67 0.243229
Target:  5'- gUCGCgCCCGCCGACgA-CGGCaGCGaCCu -3'
miRNA:   3'- -GGUG-GGGCGGUUGgUgGCCG-CGC-GGc -5'
28138 3' -64 NC_005887.1 + 35013 0.67 0.237287
Target:  5'- gCACgCCCGCCGAgUucgaaGCCGGCGaCGgCa -3'
miRNA:   3'- gGUG-GGGCGGUUgG-----UGGCCGC-GCgGc -5'
28138 3' -64 NC_005887.1 + 34720 0.66 0.288331
Target:  5'- -gAUCCgGaaaCCGGCaaGCCGGCGCGCCu -3'
miRNA:   3'- ggUGGGgC---GGUUGg-UGGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 34616 0.81 0.019389
Target:  5'- cCUugCCCGCCAGCCauucGCCguucgcgucgacgaGGCGCGCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGG----UGG--------------CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 34372 0.66 0.26824
Target:  5'- gCGCCCCGCguAUCagagugcgGCCgGGCGCGaggcCCGg -3'
miRNA:   3'- gGUGGGGCGguUGG--------UGG-CCGCGC----GGC- -5'
28138 3' -64 NC_005887.1 + 34359 0.71 0.110691
Target:  5'- gCCGCCCgcaGUCAGCCGCaCGGCGacggcaugcgcaaGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUUGGUG-GCCGCg------------CGGC- -5'
28138 3' -64 NC_005887.1 + 33887 0.67 0.214728
Target:  5'- aUCGCCgCGCCGACCugacACCcGCGUggugGCCGu -3'
miRNA:   3'- -GGUGGgGCGGUUGG----UGGcCGCG----CGGC- -5'
28138 3' -64 NC_005887.1 + 33825 0.77 0.04275
Target:  5'- aCGCCgCGCCAgauGCUcgugaagGCCGGCGCGCUGa -3'
miRNA:   3'- gGUGGgGCGGU---UGG-------UGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 33747 0.71 0.123511
Target:  5'- aUCAgCgCGCCGGCCuucacgagcaucugGCgCGGCGUGCCGg -3'
miRNA:   3'- -GGUgGgGCGGUUGG--------------UG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 33711 0.67 0.231468
Target:  5'- -aACCCuCGCCGAgCGCaGcGCGCGCUa -3'
miRNA:   3'- ggUGGG-GCGGUUgGUGgC-CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 33444 0.7 0.145914
Target:  5'- cUCAUCCUGC---CCGCCGGCGCGUg- -3'
miRNA:   3'- -GGUGGGGCGguuGGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 33214 0.67 0.231468
Target:  5'- aCGCgCCGCacuGgCACuCGGuCGCGCCGu -3'
miRNA:   3'- gGUGgGGCGgu-UgGUG-GCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 32837 0.68 0.209383
Target:  5'- uCCugCgCacgaGCCGGCUgcauggcgcgcGCCGGCGCGCaCGc -3'
miRNA:   3'- -GGugG-Gg---CGGUUGG-----------UGGCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 32784 0.75 0.064589
Target:  5'- gCUACCCCGCCGugggugaACCGCgCGGCuauccguGCGCUGu -3'
miRNA:   3'- -GGUGGGGCGGU-------UGGUG-GCCG-------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 32744 0.7 0.153769
Target:  5'- gCgGCgCUCGCguGCgCGCCGGCGCGCg- -3'
miRNA:   3'- -GgUG-GGGCGguUG-GUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 32491 0.7 0.131294
Target:  5'- aUCGCCgCCgGCCAcaucGCCGCCGGCcaCGUCGa -3'
miRNA:   3'- -GGUGG-GG-CGGU----UGGUGGCCGc-GCGGC- -5'
28138 3' -64 NC_005887.1 + 32285 0.72 0.092643
Target:  5'- uCCACacggggcgaUCGUCgGGCCAgCCGGCGCGCCGc -3'
miRNA:   3'- -GGUGg--------GGCGG-UUGGU-GGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31784 0.74 0.070526
Target:  5'- cCCACCCUGCgAGCCAgUGGUcUGCCGc -3'
miRNA:   3'- -GGUGGGGCGgUUGGUgGCCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 31535 0.67 0.225769
Target:  5'- gUCGCUUCGCCAuugACCGCguuuccguaGGCGCGCa- -3'
miRNA:   3'- -GGUGGGGCGGU---UGGUGg--------CCGCGCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.