miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 31469 0.72 0.094929
Target:  5'- cCUACCCCGCUGaaccacggcacgcACCgcuaGCCGaGCGCGUCGa -3'
miRNA:   3'- -GGUGGGGCGGU-------------UGG----UGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31394 0.79 0.027175
Target:  5'- aCgGCCCgGUCGgcacgugggacgugACCACCGGUGCGCCGa -3'
miRNA:   3'- -GgUGGGgCGGU--------------UGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31286 0.67 0.237287
Target:  5'- aUCGCCUCGUCGagcucgaccGgCAUCGGCGCaCCGg -3'
miRNA:   3'- -GGUGGGGCGGU---------UgGUGGCCGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 31008 0.68 0.199037
Target:  5'- -gGCgCCGaCAucACCGCCGaGCGCGCUGu -3'
miRNA:   3'- ggUGgGGCgGU--UGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 30927 0.66 0.288331
Target:  5'- aUCGCCUugUGCCAGCgCGCuCGGCggugaugucgGCGCCc -3'
miRNA:   3'- -GGUGGG--GCGGUUG-GUG-GCCG----------CGCGGc -5'
28138 3' -64 NC_005887.1 + 30494 0.67 0.24263
Target:  5'- cCCGCCCCgacGUCGGCCugauggugggcgaACuCGGCGUGgCGa -3'
miRNA:   3'- -GGUGGGG---CGGUUGG-------------UG-GCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 30359 0.7 0.131294
Target:  5'- -uGCCCCgauGCCGagcucgguguACCGCuCGGCGuCGCCGu -3'
miRNA:   3'- ggUGGGG---CGGU----------UGGUG-GCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 29912 0.68 0.204153
Target:  5'- cCCACUCC-CacauGCCGCgGGCcucGCGCCGa -3'
miRNA:   3'- -GGUGGGGcGgu--UGGUGgCCG---CGCGGC- -5'
28138 3' -64 NC_005887.1 + 29568 0.73 0.085394
Target:  5'- aCGCgCCCGCCGucgagGCCGCCGGCuacgacaucGUGCUGu -3'
miRNA:   3'- gGUG-GGGCGGU-----UGGUGGCCG---------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 28650 0.74 0.07594
Target:  5'- cCUACCUCGUCGACCGCguccgcgcagcgggCGGCGaCGCCu -3'
miRNA:   3'- -GGUGGGGCGGUUGGUG--------------GCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 28572 0.72 0.103218
Target:  5'- aCCGCaUCGUCAucuucCCGCCGGCGCGCg- -3'
miRNA:   3'- -GGUGgGGCGGUu----GGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 28358 0.68 0.204153
Target:  5'- gUCGCCacgaCGCUGcGCgCGCuCGGCGUGCCGa -3'
miRNA:   3'- -GGUGGg---GCGGU-UG-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 27970 0.7 0.138427
Target:  5'- aUCGCuCuuGCC-GCCGCCGGCucGgGCCGa -3'
miRNA:   3'- -GGUG-GggCGGuUGGUGGCCG--CgCGGC- -5'
28138 3' -64 NC_005887.1 + 27845 0.69 0.162005
Target:  5'- gCGCCgUCGUCAuggcgcucuACCucGCCGGCGCGCuCGg -3'
miRNA:   3'- gGUGG-GGCGGU---------UGG--UGGCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 26918 0.67 0.231468
Target:  5'- -uGCCCgGCggcaaCGGCUACCGGCagacGCGCCc -3'
miRNA:   3'- ggUGGGgCG-----GUUGGUGGCCG----CGCGGc -5'
28138 3' -64 NC_005887.1 + 26399 0.68 0.184354
Target:  5'- gCACCCgGCCAG-CGCCGGCcacgGCCu -3'
miRNA:   3'- gGUGGGgCGGUUgGUGGCCGcg--CGGc -5'
28138 3' -64 NC_005887.1 + 26315 0.68 0.184354
Target:  5'- gCCGUCCUGCagguucaGGCCgugGCCGGCGCugGCCGg -3'
miRNA:   3'- -GGUGGGGCGg------UUGG---UGGCCGCG--CGGC- -5'
28138 3' -64 NC_005887.1 + 26256 0.71 0.127856
Target:  5'- gCCGCCCCGuuuucaucuacCCGAUCAUCGcGCGCGacaCGa -3'
miRNA:   3'- -GGUGGGGC-----------GGUUGGUGGC-CGCGCg--GC- -5'
28138 3' -64 NC_005887.1 + 26144 0.73 0.090164
Target:  5'- aCGCCgCGCgGGCCGCUGaCGCGCUGa -3'
miRNA:   3'- gGUGGgGCGgUUGGUGGCcGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 25654 0.7 0.145914
Target:  5'- -aGCUucaCCGCCAGCCGCa-GCGCGUCGc -3'
miRNA:   3'- ggUGG---GGCGGUUGGUGgcCGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.