miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 25563 0.7 0.134817
Target:  5'- cCCGCCgCGCCAucguccgaGCCGCCGcUGCGuuGu -3'
miRNA:   3'- -GGUGGgGCGGU--------UGGUGGCcGCGCggC- -5'
28138 3' -64 NC_005887.1 + 25092 0.66 0.288331
Target:  5'- gCCGCCgCCGUCGgauuucgcgACCGguuguCCGGCcgagauccaGCGCCGc -3'
miRNA:   3'- -GGUGG-GGCGGU---------UGGU-----GGCCG---------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 25084 0.73 0.078687
Target:  5'- aCCGgCUgGCCGgcgGCCGCCGGCGCgaGCUGa -3'
miRNA:   3'- -GGUgGGgCGGU---UGGUGGCCGCG--CGGC- -5'
28138 3' -64 NC_005887.1 + 25014 0.73 0.090164
Target:  5'- cUCGCgCCGgCGGCCGCCGGC-CaGCCGg -3'
miRNA:   3'- -GGUGgGGCgGUUGGUGGCCGcG-CGGC- -5'
28138 3' -64 NC_005887.1 + 23595 0.66 0.26824
Target:  5'- gUACgCUGCCAGCuCACCcGCGCGUUc -3'
miRNA:   3'- gGUGgGGCGGUUG-GUGGcCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 23448 0.77 0.044079
Target:  5'- gCCAUCCCGCCGcuuccaccggaaGCCcggcaGCCGGCGaCGCCc -3'
miRNA:   3'- -GGUGGGGCGGU------------UGG-----UGGCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 23315 0.75 0.059792
Target:  5'- gCGCCUuuugcgCGCCGACCGCCGccgcucGCGUGCCGu -3'
miRNA:   3'- gGUGGG------GCGGUUGGUGGC------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 23074 0.7 0.149795
Target:  5'- aCCGCCUCGCagaAGCgACCGGCGuCGaUCa -3'
miRNA:   3'- -GGUGGGGCGg--UUGgUGGCCGC-GC-GGc -5'
28138 3' -64 NC_005887.1 + 22947 0.66 0.26824
Target:  5'- gCCACCagCGCgcgaggaucugaUAGCgGCCGGCG-GCCGu -3'
miRNA:   3'- -GGUGGg-GCG------------GUUGgUGGCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 22860 0.69 0.175105
Target:  5'- aCCAUCgacggCCGCCGGCCGCUaucagauccucGCGCGCUGg -3'
miRNA:   3'- -GGUGG-----GGCGGUUGGUGGc----------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21806 0.69 0.162005
Target:  5'- aCACgacgUCCGCgGcGCUGCCgGGCGCGCCGa -3'
miRNA:   3'- gGUG----GGGCGgU-UGGUGG-CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21645 0.69 0.157839
Target:  5'- aUACCCgaCGCCGACCaaucugACgGGCGUGUCGc -3'
miRNA:   3'- gGUGGG--GCGGUUGG------UGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21499 0.71 0.127856
Target:  5'- gCAUCgCCGCCGGCaAUCGGCGCaacgacGCCGg -3'
miRNA:   3'- gGUGG-GGCGGUUGgUGGCCGCG------CGGC- -5'
28138 3' -64 NC_005887.1 + 21322 0.7 0.142126
Target:  5'- cCCACCgCGCCGACCGCau-CG-GCCGg -3'
miRNA:   3'- -GGUGGgGCGGUUGGUGgccGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 21016 0.66 0.288331
Target:  5'- -aACCCCGCCGGCUcaacguCCGGUcagGCGaUCGu -3'
miRNA:   3'- ggUGGGGCGGUUGGu-----GGCCG---CGC-GGC- -5'
28138 3' -64 NC_005887.1 + 20545 0.67 0.220189
Target:  5'- gCCGCCCUGagCAGCCaucaacacauuGCCGaGCGUGuuGg -3'
miRNA:   3'- -GGUGGGGCg-GUUGG-----------UGGC-CGCGCggC- -5'
28138 3' -64 NC_005887.1 + 19259 0.67 0.237287
Target:  5'- aCCGCgCCGCCugucuCCACgccCGCGCCGc -3'
miRNA:   3'- -GGUGgGGCGGuu---GGUGgccGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18624 0.69 0.175105
Target:  5'- gCAUgUCGCCcGCgaaGCCGGCGCcGCCGc -3'
miRNA:   3'- gGUGgGGCGGuUGg--UGGCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 18449 0.72 0.092643
Target:  5'- gCCAUCggguUCGCgAG-CGCCGGCGCGCCGu -3'
miRNA:   3'- -GGUGG----GGCGgUUgGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18110 0.72 0.103218
Target:  5'- aUCGCCCaauCGUCGGCCGucaguCCGGCGCGCg- -3'
miRNA:   3'- -GGUGGG---GCGGUUGGU-----GGCCGCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.