miRNA display CGI


Results 81 - 100 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 18082 0.69 0.169316
Target:  5'- aCGCCCggcaaguauggggaCGCCGAauaccugaCACCGGaCGCGCUGu -3'
miRNA:   3'- gGUGGG--------------GCGGUUg-------GUGGCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18002 0.68 0.194033
Target:  5'- aCAgCCUGaCCGaaugggACCGCCGcgcgcuuacGCGCGCCGg -3'
miRNA:   3'- gGUgGGGC-GGU------UGGUGGC---------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 17818 0.67 0.231468
Target:  5'- -aACCgggCGCCAucaGCCGCgCGGcCGUGCCGa -3'
miRNA:   3'- ggUGGg--GCGGU---UGGUG-GCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 17741 0.68 0.204153
Target:  5'- aCGCUCgGCaCGGCCGCgCGGCugaugGCGCCc -3'
miRNA:   3'- gGUGGGgCG-GUUGGUG-GCCG-----CGCGGc -5'
28138 3' -64 NC_005887.1 + 17589 0.66 0.281505
Target:  5'- aCACgCCCGUCAAUC-CCGcgcucGCGCGCa- -3'
miRNA:   3'- gGUG-GGGCGGUUGGuGGC-----CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 16544 0.69 0.157839
Target:  5'- aCCAgCCCGCCGgauccuGCCGCgCGGUcgaGCGCa- -3'
miRNA:   3'- -GGUgGGGCGGU------UGGUG-GCCG---CGCGgc -5'
28138 3' -64 NC_005887.1 + 16231 0.73 0.0831
Target:  5'- uUCGCCUcgauCGCUcGCgCACuCGGCGCGCCGg -3'
miRNA:   3'- -GGUGGG----GCGGuUG-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 16140 1.1 0.000105
Target:  5'- aCCACCCCGCCAACCACCGGCGCGCCGa -3'
miRNA:   3'- -GGUGGGGCGGUUGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 15983 0.67 0.248682
Target:  5'- uCCGgCCCGCgcggaacgcagguCGGCCAgCuGCGCGUCGa -3'
miRNA:   3'- -GGUgGGGCG-------------GUUGGUgGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 15909 0.68 0.199037
Target:  5'- gCAgCUgGCCGACCugcguuCCGcGCGgGCCGg -3'
miRNA:   3'- gGUgGGgCGGUUGGu-----GGC-CGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 15691 0.71 0.121229
Target:  5'- aCCGCCgCGCgGccggaugauuccGCCGCCGGCGUGaaGg -3'
miRNA:   3'- -GGUGGgGCGgU------------UGGUGGCCGCGCggC- -5'
28138 3' -64 NC_005887.1 + 15066 0.68 0.189139
Target:  5'- gCAggUgUCGCCGaagggaGCCGCCGGCGUGUCGc -3'
miRNA:   3'- gGU--GgGGCGGU------UGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 14975 0.71 0.117094
Target:  5'- aCGCCUaCGCCGcgcaggccgcgcagGCCGCaGGCGUGCCGc -3'
miRNA:   3'- gGUGGG-GCGGU--------------UGGUGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 14778 0.71 0.122528
Target:  5'- aCCACCUCGCCGACCagaucaacccgcuggACCcgaucaaucuGGCG-GCCGc -3'
miRNA:   3'- -GGUGGGGCGGUUGG---------------UGG----------CCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 14701 0.78 0.035263
Target:  5'- gCACCgCGCCGGCUGCCGugaGCGCGCCc -3'
miRNA:   3'- gGUGGgGCGGUUGGUGGC---CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 14680 0.71 0.111885
Target:  5'- gCUGCCCCGCaCGAUCgggcucgucgcgGCgGGCGgGCCGg -3'
miRNA:   3'- -GGUGGGGCG-GUUGG------------UGgCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 14593 0.66 0.281505
Target:  5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3'
miRNA:   3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 14117 0.66 0.253614
Target:  5'- aCCuCCCgggaaCGgCAucgucucaggcugcGCCGgCGGCGCGCCGg -3'
miRNA:   3'- -GGuGGG-----GCgGU--------------UGGUgGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 14014 0.87 0.006865
Target:  5'- gCGCCuCCG-CAACCGCCGGCGCGCCGc -3'
miRNA:   3'- gGUGG-GGCgGUUGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13986 0.67 0.243229
Target:  5'- uCgACCCCGUCGA-CACCGcguaCGUGCCa -3'
miRNA:   3'- -GgUGGGGCGGUUgGUGGCc---GCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.