miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 13381 0.7 0.142126
Target:  5'- gCGCUCgCGCUGAagGCCGGCGCGgCGg -3'
miRNA:   3'- gGUGGG-GCGGUUggUGGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 21322 0.7 0.142126
Target:  5'- cCCACCgCGCCGACCGCau-CG-GCCGg -3'
miRNA:   3'- -GGUGGgGCGGUUGGUGgccGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 25654 0.7 0.145914
Target:  5'- -aGCUucaCCGCCAGCCGCa-GCGCGUCGc -3'
miRNA:   3'- ggUGG---GGCGGUUGGUGgcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 8467 0.7 0.149795
Target:  5'- gCGCCCgGCgCAACCGCuCGGCGaCGacaCGu -3'
miRNA:   3'- gGUGGGgCG-GUUGGUG-GCCGC-GCg--GC- -5'
28138 3' -64 NC_005887.1 + 32744 0.7 0.153769
Target:  5'- gCgGCgCUCGCguGCgCGCCGGCGCGCg- -3'
miRNA:   3'- -GgUG-GGGCGguUG-GUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 21645 0.69 0.157839
Target:  5'- aUACCCgaCGCCGACCaaucugACgGGCGUGUCGc -3'
miRNA:   3'- gGUGGG--GCGGUUGG------UGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21806 0.69 0.162005
Target:  5'- aCACgacgUCCGCgGcGCUGCCgGGCGCGCCGa -3'
miRNA:   3'- gGUG----GGGCGgU-UGGUGG-CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18082 0.69 0.169316
Target:  5'- aCGCCCggcaaguauggggaCGCCGAauaccugaCACCGGaCGCGCUGu -3'
miRNA:   3'- gGUGGG--------------GCGGUUg-------GUGGCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 27970 0.7 0.138427
Target:  5'- aUCGCuCuuGCC-GCCGCCGGCucGgGCCGa -3'
miRNA:   3'- -GGUG-GggCGGuUGGUGGCCG--CgCGGC- -5'
28138 3' -64 NC_005887.1 + 41273 0.7 0.134817
Target:  5'- -gGCgCCGUCGACCugCgcacgGGCGCGCUGc -3'
miRNA:   3'- ggUGgGGCGGUUGGugG-----CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 33747 0.71 0.123511
Target:  5'- aUCAgCgCGCCGGCCuucacgagcaucugGCgCGGCGUGCCGg -3'
miRNA:   3'- -GGUgGgGCGGUUGG--------------UG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11717 0.71 0.124502
Target:  5'- aUCGCUUCGCC-GCgCGCaCGGCGCGCaCGa -3'
miRNA:   3'- -GGUGGGGCGGuUG-GUG-GCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 12593 0.71 0.127856
Target:  5'- gCCgACCCgGCCGcgaCGCuCGGCGUGCUGa -3'
miRNA:   3'- -GG-UGGGgCGGUug-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 21499 0.71 0.127856
Target:  5'- gCAUCgCCGCCGGCaAUCGGCGCaacgacGCCGg -3'
miRNA:   3'- gGUGG-GGCGGUUGgUGGCCGCG------CGGC- -5'
28138 3' -64 NC_005887.1 + 30359 0.7 0.131294
Target:  5'- -uGCCCCgauGCCGagcucgguguACCGCuCGGCGuCGCCGu -3'
miRNA:   3'- ggUGGGG---CGGU----------UGGUG-GCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 2398 0.7 0.132693
Target:  5'- -gAUCCUGCguGCCGCUGGCuucgaggcgaagcccGCGCCGa -3'
miRNA:   3'- ggUGGGGCGguUGGUGGCCG---------------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 40856 0.7 0.134817
Target:  5'- uCCA-CCgGCgaAGCCGCCGcGCGCGUCGa -3'
miRNA:   3'- -GGUgGGgCGg-UUGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 3704 0.7 0.134817
Target:  5'- aCCACgCCGUCGA--GCC-GCGCGCCGa -3'
miRNA:   3'- -GGUGgGGCGGUUggUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31394 0.79 0.027175
Target:  5'- aCgGCCCgGUCGgcacgugggacgugACCACCGGUGCGCCGa -3'
miRNA:   3'- -GgUGGGgCGGU--------------UGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 14593 0.66 0.281505
Target:  5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3'
miRNA:   3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.