Results 81 - 100 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 3' | -64 | NC_005887.1 | + | 7670 | 0.67 | 0.243229 |
Target: 5'- gCCGCCCa-UCGAUCaACCGGCGCcgcuuacgcgauGCCGu -3' miRNA: 3'- -GGUGGGgcGGUUGG-UGGCCGCG------------CGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13986 | 0.67 | 0.243229 |
Target: 5'- uCgACCCCGUCGA-CACCGcguaCGUGCCa -3' miRNA: 3'- -GgUGGGGCGGUUgGUGGCc---GCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 35130 | 0.67 | 0.243229 |
Target: 5'- gUCGCgCCCGCCGACgA-CGGCaGCGaCCu -3' miRNA: 3'- -GGUG-GGGCGGUUGgUgGCCG-CGC-GGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 30494 | 0.67 | 0.24263 |
Target: 5'- cCCGCCCCgacGUCGGCCugauggugggcgaACuCGGCGUGgCGa -3' miRNA: 3'- -GGUGGGG---CGGUUGG-------------UG-GCCGCGCgGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 36941 | 0.67 | 0.24263 |
Target: 5'- -uGCCCCacGUUGACCACCaggaacaGGCGCGCg- -3' miRNA: 3'- ggUGGGG--CGGUUGGUGG-------CCGCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 19259 | 0.67 | 0.237287 |
Target: 5'- aCCGCgCCGCCugucuCCACgccCGCGCCGc -3' miRNA: 3'- -GGUGgGGCGGuu---GGUGgccGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 35013 | 0.67 | 0.237287 |
Target: 5'- gCACgCCCGCCGAgUucgaaGCCGGCGaCGgCa -3' miRNA: 3'- gGUG-GGGCGGUUgG-----UGGCCGC-GCgGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 40881 | 0.67 | 0.237287 |
Target: 5'- aUCACCUCGUCAucguCgAgCGGCGCGUCn -3' miRNA: 3'- -GGUGGGGCGGUu---GgUgGCCGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 36096 | 0.67 | 0.249294 |
Target: 5'- gCGCCUCGCCGG-CGCCgaGGUGaCGCUGc -3' miRNA: 3'- gGUGGGGCGGUUgGUGG--CCGC-GCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 5996 | 0.67 | 0.249294 |
Target: 5'- aUCACCUCGcCCGACaCACCGaacuuGCGCaucGCCu -3' miRNA: 3'- -GGUGGGGC-GGUUG-GUGGC-----CGCG---CGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 11846 | 0.66 | 0.253614 |
Target: 5'- gCCGCCgagcagcgaggacgCCGCCGAgaucCCACCGGUGaucauGCUGu -3' miRNA: 3'- -GGUGG--------------GGCGGUU----GGUGGCCGCg----CGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 14593 | 0.66 | 0.281505 |
Target: 5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3' miRNA: 3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13754 | 0.66 | 0.274808 |
Target: 5'- gCCGCCCgugGUCGAgaucCCACCcGuCGCGCCGc -3' miRNA: 3'- -GGUGGGg--CGGUU----GGUGGcC-GCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 4963 | 0.66 | 0.26824 |
Target: 5'- aCACCUcgCGCCGGCCcUCGGCGaccauCGUCGc -3' miRNA: 3'- gGUGGG--GCGGUUGGuGGCCGC-----GCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 22947 | 0.66 | 0.26824 |
Target: 5'- gCCACCagCGCgcgaggaucugaUAGCgGCCGGCG-GCCGu -3' miRNA: 3'- -GGUGGg-GCG------------GUUGgUGGCCGCgCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 23595 | 0.66 | 0.26824 |
Target: 5'- gUACgCUGCCAGCuCACCcGCGCGUUc -3' miRNA: 3'- gGUGgGGCGGUUG-GUGGcCGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13518 | 0.66 | 0.255483 |
Target: 5'- gCGCgCCCGUCAggaugaacguGCUgAgCGGUGCGCCGc -3' miRNA: 3'- gGUG-GGGCGGU----------UGG-UgGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 11180 | 0.66 | 0.255483 |
Target: 5'- gCGCCUCgGCCAGCUucgcgcgcaccaGCCGaUGCGCCa -3' miRNA: 3'- gGUGGGG-CGGUUGG------------UGGCcGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 12982 | 0.66 | 0.255483 |
Target: 5'- aCGCgCUCGCgAA--ACCGGCGUGCUGg -3' miRNA: 3'- gGUG-GGGCGgUUggUGGCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 14117 | 0.66 | 0.253614 |
Target: 5'- aCCuCCCgggaaCGgCAucgucucaggcugcGCCGgCGGCGCGCCGg -3' miRNA: 3'- -GGuGGG-----GCgGU--------------UGGUgGCCGCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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