Results 21 - 40 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 3' | -64 | NC_005887.1 | + | 40881 | 0.67 | 0.237287 |
Target: 5'- aUCACCUCGUCAucguCgAgCGGCGCGUCn -3' miRNA: 3'- -GGUGGGGCGGUu---GgUgGCCGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 36941 | 0.67 | 0.24263 |
Target: 5'- -uGCCCCacGUUGACCACCaggaacaGGCGCGCg- -3' miRNA: 3'- ggUGGGG--CGGUUGGUGG-------CCGCGCGgc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 11846 | 0.66 | 0.253614 |
Target: 5'- gCCGCCgagcagcgaggacgCCGCCGAgaucCCACCGGUGaucauGCUGu -3' miRNA: 3'- -GGUGG--------------GGCGGUU----GGUGGCCGCg----CGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 4963 | 0.66 | 0.26824 |
Target: 5'- aCACCUcgCGCCGGCCcUCGGCGaccauCGUCGc -3' miRNA: 3'- gGUGGG--GCGGUUGGuGGCCGC-----GCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 28358 | 0.68 | 0.204153 |
Target: 5'- gUCGCCacgaCGCUGcGCgCGCuCGGCGUGCCGa -3' miRNA: 3'- -GGUGGg---GCGGU-UG-GUG-GCCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 20545 | 0.67 | 0.220189 |
Target: 5'- gCCGCCCUGagCAGCCaucaacacauuGCCGaGCGUGuuGg -3' miRNA: 3'- -GGUGGGGCg-GUUGG-----------UGGC-CGCGCggC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 35130 | 0.67 | 0.243229 |
Target: 5'- gUCGCgCCCGCCGACgA-CGGCaGCGaCCu -3' miRNA: 3'- -GGUG-GGGCGGUUGgUgGCCG-CGC-GGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13754 | 0.66 | 0.274808 |
Target: 5'- gCCGCCCgugGUCGAgaucCCACCcGuCGCGCCGc -3' miRNA: 3'- -GGUGGGg--CGGUU----GGUGGcC-GCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 26918 | 0.67 | 0.231468 |
Target: 5'- -uGCCCgGCggcaaCGGCUACCGGCagacGCGCCc -3' miRNA: 3'- ggUGGGgCG-----GUUGGUGGCCG----CGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 14593 | 0.66 | 0.281505 |
Target: 5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3' miRNA: 3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 30494 | 0.67 | 0.24263 |
Target: 5'- cCCGCCCCgacGUCGGCCugauggugggcgaACuCGGCGUGgCGa -3' miRNA: 3'- -GGUGGGG---CGGUUGG-------------UG-GCCGCGCgGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 9406 | 0.67 | 0.231468 |
Target: 5'- uCCugCCCGgugccgucccaUCGACUACCGGacguguGCGUCGg -3' miRNA: 3'- -GGugGGGC-----------GGUUGGUGGCCg-----CGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 1645 | 0.67 | 0.243229 |
Target: 5'- gCCGCCaC-CCAcCCACCGGCccagguCGCCGa -3' miRNA: 3'- -GGUGGgGcGGUuGGUGGCCGc-----GCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 5996 | 0.67 | 0.249294 |
Target: 5'- aUCACCUCGcCCGACaCACCGaacuuGCGCaucGCCu -3' miRNA: 3'- -GGUGGGGC-GGUUG-GUGGC-----CGCG---CGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 11180 | 0.66 | 0.255483 |
Target: 5'- gCGCCUCgGCCAGCUucgcgcgcaccaGCCGaUGCGCCa -3' miRNA: 3'- gGUGGGG-CGGUUGG------------UGGCcGCGCGGc -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 22947 | 0.66 | 0.26824 |
Target: 5'- gCCACCagCGCgcgaggaucugaUAGCgGCCGGCG-GCCGu -3' miRNA: 3'- -GGUGGg-GCG------------GUUGgUGGCCGCgCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 13697 | 0.68 | 0.184354 |
Target: 5'- gCUGCUCgGCUgagugcGGCCGCC-GCGCGCCGc -3' miRNA: 3'- -GGUGGGgCGG------UUGGUGGcCGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 31008 | 0.68 | 0.199037 |
Target: 5'- -gGCgCCGaCAucACCGCCGaGCGCGCUGu -3' miRNA: 3'- ggUGgGGCgGU--UGGUGGC-CGCGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 2003 | 0.68 | 0.209383 |
Target: 5'- cCCACCgaUCGCCGucacgcaugacGCCGcCCGGC-UGCCGa -3' miRNA: 3'- -GGUGG--GGCGGU-----------UGGU-GGCCGcGCGGC- -5' |
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28138 | 3' | -64 | NC_005887.1 | + | 33887 | 0.67 | 0.214728 |
Target: 5'- aUCGCCgCGCCGACCugacACCcGCGUggugGCCGu -3' miRNA: 3'- -GGUGGgGCGGUUGG----UGGcCGCG----CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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