miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 631 0.68 0.207802
Target:  5'- cCCAUCUgGCCGGCgGucuucgcgcuguauCCGGCGCGgCGc -3'
miRNA:   3'- -GGUGGGgCGGUUGgU--------------GGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 35130 0.67 0.243229
Target:  5'- gUCGCgCCCGCCGACgA-CGGCaGCGaCCu -3'
miRNA:   3'- -GGUG-GGGCGGUUGgUgGCCG-CGC-GGc -5'
28138 3' -64 NC_005887.1 + 13754 0.66 0.274808
Target:  5'- gCCGCCCgugGUCGAgaucCCACCcGuCGCGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUU----GGUGGcC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 32837 0.68 0.209383
Target:  5'- uCCugCgCacgaGCCGGCUgcauggcgcgcGCCGGCGCGCaCGc -3'
miRNA:   3'- -GGugG-Gg---CGGUUGG-----------UGGCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 14593 0.66 0.281505
Target:  5'- aCGCgCCGCCGACgGCCG-CGC-CUGc -3'
miRNA:   3'- gGUGgGGCGGUUGgUGGCcGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 34359 0.71 0.110691
Target:  5'- gCCGCCCgcaGUCAGCCGCaCGGCGacggcaugcgcaaGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUUGGUG-GCCGCg------------CGGC- -5'
28138 3' -64 NC_005887.1 + 22947 0.66 0.26824
Target:  5'- gCCACCagCGCgcgaggaucugaUAGCgGCCGGCG-GCCGu -3'
miRNA:   3'- -GGUGGg-GCG------------GUUGgUGGCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 40132 0.71 0.119304
Target:  5'- cCCGCCCCGCCGgacgaucggaacgguAUCgggcguagGCCGGC-CGCCu -3'
miRNA:   3'- -GGUGGGGCGGU---------------UGG--------UGGCCGcGCGGc -5'
28138 3' -64 NC_005887.1 + 25563 0.7 0.134817
Target:  5'- cCCGCCgCGCCAucguccgaGCCGCCGcUGCGuuGu -3'
miRNA:   3'- -GGUGGgGCGGU--------UGGUGGCcGCGCggC- -5'
28138 3' -64 NC_005887.1 + 23074 0.7 0.149795
Target:  5'- aCCGCCUCGCagaAGCgACCGGCGuCGaUCa -3'
miRNA:   3'- -GGUGGGGCGg--UUGgUGGCCGC-GC-GGc -5'
28138 3' -64 NC_005887.1 + 3075 0.69 0.162005
Target:  5'- cCCGCggCGCUGGCCGCaGGCGCGuuGa -3'
miRNA:   3'- -GGUGggGCGGUUGGUGgCCGCGCggC- -5'
28138 3' -64 NC_005887.1 + 13697 0.68 0.184354
Target:  5'- gCUGCUCgGCUgagugcGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- -GGUGGGgCGG------UUGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31008 0.68 0.199037
Target:  5'- -gGCgCCGaCAucACCGCCGaGCGCGCUGu -3'
miRNA:   3'- ggUGgGGCgGU--UGGUGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13402 0.67 0.214188
Target:  5'- uCCACUgCGCgGcgagauccgcgauGCgGCCGGCGuUGCCGa -3'
miRNA:   3'- -GGUGGgGCGgU-------------UGgUGGCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 26918 0.67 0.231468
Target:  5'- -uGCCCgGCggcaaCGGCUACCGGCagacGCGCCc -3'
miRNA:   3'- ggUGGGgCG-----GUUGGUGGCCG----CGCGGc -5'
28138 3' -64 NC_005887.1 + 40881 0.67 0.237287
Target:  5'- aUCACCUCGUCAucguCgAgCGGCGCGUCn -3'
miRNA:   3'- -GGUGGGGCGGUu---GgUgGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 36941 0.67 0.24263
Target:  5'- -uGCCCCacGUUGACCACCaggaacaGGCGCGCg- -3'
miRNA:   3'- ggUGGGG--CGGUUGGUGG-------CCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 1645 0.67 0.243229
Target:  5'- gCCGCCaC-CCAcCCACCGGCccagguCGCCGa -3'
miRNA:   3'- -GGUGGgGcGGUuGGUGGCCGc-----GCGGC- -5'
28138 3' -64 NC_005887.1 + 5996 0.67 0.249294
Target:  5'- aUCACCUCGcCCGACaCACCGaacuuGCGCaucGCCu -3'
miRNA:   3'- -GGUGGGGC-GGUUG-GUGGC-----CGCG---CGGc -5'
28138 3' -64 NC_005887.1 + 11180 0.66 0.255483
Target:  5'- gCGCCUCgGCCAGCUucgcgcgcaccaGCCGaUGCGCCa -3'
miRNA:   3'- gGUGGGG-CGGUUGG------------UGGCcGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.