miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 26399 0.68 0.184354
Target:  5'- gCACCCgGCCAG-CGCCGGCcacgGCCu -3'
miRNA:   3'- gGUGGGgCGGUUgGUGGCCGcg--CGGc -5'
28138 3' -64 NC_005887.1 + 2521 0.69 0.166271
Target:  5'- gCGCCUCGUCGACggCGCCGuaGCGCgCGa -3'
miRNA:   3'- gGUGGGGCGGUUG--GUGGCcgCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 12982 0.66 0.255483
Target:  5'- aCGCgCUCGCgAA--ACCGGCGUGCUGg -3'
miRNA:   3'- gGUG-GGGCGgUUggUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 5996 0.67 0.249294
Target:  5'- aUCACCUCGcCCGACaCACCGaacuuGCGCaucGCCu -3'
miRNA:   3'- -GGUGGGGC-GGUUG-GUGGC-----CGCG---CGGc -5'
28138 3' -64 NC_005887.1 + 7670 0.67 0.243229
Target:  5'- gCCGCCCa-UCGAUCaACCGGCGCcgcuuacgcgauGCCGu -3'
miRNA:   3'- -GGUGGGgcGGUUGG-UGGCCGCG------------CGGC- -5'
28138 3' -64 NC_005887.1 + 30494 0.67 0.24263
Target:  5'- cCCGCCCCgacGUCGGCCugauggugggcgaACuCGGCGUGgCGa -3'
miRNA:   3'- -GGUGGGG---CGGUUGG-------------UG-GCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 9406 0.67 0.231468
Target:  5'- uCCugCCCGgugccgucccaUCGACUACCGGacguguGCGUCGg -3'
miRNA:   3'- -GGugGGGC-----------GGUUGGUGGCCg-----CGCGGC- -5'
28138 3' -64 NC_005887.1 + 26918 0.67 0.231468
Target:  5'- -uGCCCgGCggcaaCGGCUACCGGCagacGCGCCc -3'
miRNA:   3'- ggUGGGgCG-----GUUGGUGGCCG----CGCGGc -5'
28138 3' -64 NC_005887.1 + 40601 0.68 0.209383
Target:  5'- gCGCCagaCCGUCGucGCUGCC-GCGCGCCGc -3'
miRNA:   3'- gGUGG---GGCGGU--UGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 631 0.68 0.207802
Target:  5'- cCCAUCUgGCCGGCgGucuucgcgcuguauCCGGCGCGgCGc -3'
miRNA:   3'- -GGUGGGgCGGUUGgU--------------GGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 4471 0.75 0.055036
Target:  5'- aUCGCCgCGCCu-UCGCCGGCGCGCa- -3'
miRNA:   3'- -GGUGGgGCGGuuGGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 32784 0.75 0.064589
Target:  5'- gCUACCCCGCCGugggugaACCGCgCGGCuauccguGCGCUGu -3'
miRNA:   3'- -GGUGGGGCGGU-------UGGUG-GCCG-------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 16544 0.69 0.157839
Target:  5'- aCCAgCCCGCCGgauccuGCCGCgCGGUcgaGCGCa- -3'
miRNA:   3'- -GGUgGGGCGGU------UGGUG-GCCG---CGCGgc -5'
28138 3' -64 NC_005887.1 + 4111 0.7 0.142126
Target:  5'- aCCAuuuCCUCGCCcuugucguucaGGCCACCccaauucaGCGCGCCGg -3'
miRNA:   3'- -GGU---GGGGCGG-----------UUGGUGGc-------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40132 0.71 0.119304
Target:  5'- cCCGCCCCGCCGgacgaucggaacgguAUCgggcguagGCCGGC-CGCCu -3'
miRNA:   3'- -GGUGGGGCGGU---------------UGG--------UGGCCGcGCGGc -5'
28138 3' -64 NC_005887.1 + 34359 0.71 0.110691
Target:  5'- gCCGCCCgcaGUCAGCCGCaCGGCGacggcaugcgcaaGCCGc -3'
miRNA:   3'- -GGUGGGg--CGGUUGGUG-GCCGCg------------CGGC- -5'
28138 3' -64 NC_005887.1 + 28572 0.72 0.103218
Target:  5'- aCCGCaUCGUCAucuucCCGCCGGCGCGCg- -3'
miRNA:   3'- -GGUGgGGCGGUu----GGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 31469 0.72 0.094929
Target:  5'- cCUACCCCGCUGaaccacggcacgcACCgcuaGCCGaGCGCGUCGa -3'
miRNA:   3'- -GGUGGGGCGGU-------------UGG----UGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 29568 0.73 0.085394
Target:  5'- aCGCgCCCGCCGucgagGCCGCCGGCuacgacaucGUGCUGu -3'
miRNA:   3'- gGUG-GGGCGGU-----UGGUGGCCG---------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 25084 0.73 0.078687
Target:  5'- aCCGgCUgGCCGgcgGCCGCCGGCGCgaGCUGa -3'
miRNA:   3'- -GGUgGGgCGGU---UGGUGGCCGCG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.