miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 14117 0.66 0.253614
Target:  5'- aCCuCCCgggaaCGgCAucgucucaggcugcGCCGgCGGCGCGCCGg -3'
miRNA:   3'- -GGuGGG-----GCgGU--------------UGGUgGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11846 0.66 0.253614
Target:  5'- gCCGCCgagcagcgaggacgCCGCCGAgaucCCACCGGUGaucauGCUGu -3'
miRNA:   3'- -GGUGG--------------GGCGGUU----GGUGGCCGCg----CGGC- -5'
28138 3' -64 NC_005887.1 + 5996 0.67 0.249294
Target:  5'- aUCACCUCGcCCGACaCACCGaacuuGCGCaucGCCu -3'
miRNA:   3'- -GGUGGGGC-GGUUG-GUGGC-----CGCG---CGGc -5'
28138 3' -64 NC_005887.1 + 37686 0.67 0.249294
Target:  5'- gCCGCCCCG-CAugCAa--GCGaCGCCGg -3'
miRNA:   3'- -GGUGGGGCgGUugGUggcCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 36096 0.67 0.249294
Target:  5'- gCGCCUCGCCGG-CGCCgaGGUGaCGCUGc -3'
miRNA:   3'- gGUGGGGCGGUUgGUGG--CCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 15983 0.67 0.248682
Target:  5'- uCCGgCCCGCgcggaacgcagguCGGCCAgCuGCGCGUCGa -3'
miRNA:   3'- -GGUgGGGCG-------------GUUGGUgGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 13986 0.67 0.243229
Target:  5'- uCgACCCCGUCGA-CACCGcguaCGUGCCa -3'
miRNA:   3'- -GgUGGGGCGGUUgGUGGCc---GCGCGGc -5'
28138 3' -64 NC_005887.1 + 7670 0.67 0.243229
Target:  5'- gCCGCCCa-UCGAUCaACCGGCGCcgcuuacgcgauGCCGu -3'
miRNA:   3'- -GGUGGGgcGGUUGG-UGGCCGCG------------CGGC- -5'
28138 3' -64 NC_005887.1 + 35130 0.67 0.243229
Target:  5'- gUCGCgCCCGCCGACgA-CGGCaGCGaCCu -3'
miRNA:   3'- -GGUG-GGGCGGUUGgUgGCCG-CGC-GGc -5'
28138 3' -64 NC_005887.1 + 1645 0.67 0.243229
Target:  5'- gCCGCCaC-CCAcCCACCGGCccagguCGCCGa -3'
miRNA:   3'- -GGUGGgGcGGUuGGUGGCCGc-----GCGGC- -5'
28138 3' -64 NC_005887.1 + 40906 0.67 0.243229
Target:  5'- aCGagCCGCCGaagGCUACCGcGCGCGCa- -3'
miRNA:   3'- gGUggGGCGGU---UGGUGGC-CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 36941 0.67 0.24263
Target:  5'- -uGCCCCacGUUGACCACCaggaacaGGCGCGCg- -3'
miRNA:   3'- ggUGGGG--CGGUUGGUGG-------CCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 30494 0.67 0.24263
Target:  5'- cCCGCCCCgacGUCGGCCugauggugggcgaACuCGGCGUGgCGa -3'
miRNA:   3'- -GGUGGGG---CGGUUGG-------------UG-GCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 19259 0.67 0.237287
Target:  5'- aCCGCgCCGCCugucuCCACgccCGCGCCGc -3'
miRNA:   3'- -GGUGgGGCGGuu---GGUGgccGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 35013 0.67 0.237287
Target:  5'- gCACgCCCGCCGAgUucgaaGCCGGCGaCGgCa -3'
miRNA:   3'- gGUG-GGGCGGUUgG-----UGGCCGC-GCgGc -5'
28138 3' -64 NC_005887.1 + 40881 0.67 0.237287
Target:  5'- aUCACCUCGUCAucguCgAgCGGCGCGUCn -3'
miRNA:   3'- -GGUGGGGCGGUu---GgUgGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 31286 0.67 0.237287
Target:  5'- aUCGCCUCGUCGagcucgaccGgCAUCGGCGCaCCGg -3'
miRNA:   3'- -GGUGGGGCGGU---------UgGUGGCCGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 41582 0.67 0.237287
Target:  5'- aCguUCCUGUCGGCCAgCGGCG-GCCc -3'
miRNA:   3'- -GguGGGGCGGUUGGUgGCCGCgCGGc -5'
28138 3' -64 NC_005887.1 + 8850 0.67 0.231468
Target:  5'- gCAgCuuGUgAA-CGCCGGCGCGCCc -3'
miRNA:   3'- gGUgGggCGgUUgGUGGCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 33214 0.67 0.231468
Target:  5'- aCGCgCCGCacuGgCACuCGGuCGCGCCGu -3'
miRNA:   3'- gGUGgGGCGgu-UgGUG-GCC-GCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.