Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28138 | 5' | -55.9 | NC_005887.1 | + | 16064 | 0.67 | 0.532071 |
Target: 5'- cGGC--UCGcGGCGggUCUGCGCGc-- -3' miRNA: 3'- -UCGcuAGCuCCGCuuGGACGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 34378 | 0.67 | 0.51066 |
Target: 5'- cGCGuAUCaGAGuGCG-GCCggGCGCGAGGc -3' miRNA: 3'- uCGC-UAG-CUC-CGCuUGGa-CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 16522 | 0.67 | 0.51066 |
Target: 5'- cGCGGUCGAGcGCauGCCcGCGCGc-- -3' miRNA: 3'- uCGCUAGCUC-CGcuUGGaCGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 40353 | 0.68 | 0.479248 |
Target: 5'- uGGCcGUCGAGcGCGGccguGCCgcucgucgcGCGCGAGGa -3' miRNA: 3'- -UCGcUAGCUC-CGCU----UGGa--------CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 12793 | 0.68 | 0.45884 |
Target: 5'- cGCGAUCGAGcGCauucuGCugCUGCGCGAc- -3' miRNA: 3'- uCGCUAGCUC-CGcu---UG--GACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 18297 | 0.68 | 0.45884 |
Target: 5'- cGGCGuggcCGAGGCGAucACCUucGUGCGcAGa -3' miRNA: 3'- -UCGCua--GCUCCGCU--UGGA--CGCGCuUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 24748 | 0.69 | 0.448812 |
Target: 5'- aGGCGGUCGAGGau-GCCgGcCGCGGc- -3' miRNA: 3'- -UCGCUAGCUCCgcuUGGaC-GCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 14550 | 0.69 | 0.448812 |
Target: 5'- cGCGG-CG-GGCacGAUCUGCGCGAGGc -3' miRNA: 3'- uCGCUaGCuCCGc-UUGGACGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 8165 | 0.69 | 0.448812 |
Target: 5'- cGGCGAgCGcGGCGAG-CUGCGCGc-- -3' miRNA: 3'- -UCGCUaGCuCCGCUUgGACGCGCuuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 16845 | 0.69 | 0.438905 |
Target: 5'- cGCGAcaucauccgCGAGGUGuACCgcgGCGCGGAc -3' miRNA: 3'- uCGCUa--------GCUCCGCuUGGa--CGCGCUUc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 15075 | 0.69 | 0.429125 |
Target: 5'- cGCGAgcaucagcUCG-GGCGGcacgccugcgGCCUGCGCGGc- -3' miRNA: 3'- uCGCU--------AGCuCCGCU----------UGGACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 39018 | 0.69 | 0.429125 |
Target: 5'- cGCGcaGUCGAcGGCG-GCUUGCuGCGGAGu -3' miRNA: 3'- uCGC--UAGCU-CCGCuUGGACG-CGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 37439 | 0.69 | 0.429125 |
Target: 5'- gAGUGGagCGcGGCGcuuGCCUGCGCGGu- -3' miRNA: 3'- -UCGCUa-GCuCCGCu--UGGACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 36033 | 0.69 | 0.41756 |
Target: 5'- gGGCGAacgCGGGGCGAAgggcacgagcgaCUGCGUGAu- -3' miRNA: 3'- -UCGCUa--GCUCCGCUUg-----------GACGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 38374 | 0.69 | 0.400575 |
Target: 5'- cGGUGAUCGAcaacGGCGAcggcacccugACCguugcGUGCGAAGu -3' miRNA: 3'- -UCGCUAGCU----CCGCU----------UGGa----CGCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 7457 | 0.7 | 0.382226 |
Target: 5'- uGGCGAUCGucgucGGCGAGCUgaaCGCGGc- -3' miRNA: 3'- -UCGCUAGCu----CCGCUUGGac-GCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 35206 | 0.7 | 0.382226 |
Target: 5'- gGGCGAUuCGuuGCGcagcagcuugucGGCCUGCGUGggGc -3' miRNA: 3'- -UCGCUA-GCucCGC------------UUGGACGCGCuuC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 5817 | 0.7 | 0.373264 |
Target: 5'- cGGCGAUCGAGucggcGCGggUCgcgaaGgGCGAAGc -3' miRNA: 3'- -UCGCUAGCUC-----CGCuuGGa----CgCGCUUC- -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 1742 | 0.7 | 0.355773 |
Target: 5'- cGUGcUCGGGGCGAuCgaGCGCGAu- -3' miRNA: 3'- uCGCuAGCUCCGCUuGgaCGCGCUuc -5' |
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28138 | 5' | -55.9 | NC_005887.1 | + | 32293 | 0.71 | 0.314616 |
Target: 5'- gGGCGAUCGucGGGCcAGCCgGCGCGc-- -3' miRNA: 3'- -UCGCUAGC--UCCGcUUGGaCGCGCuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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