Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 21379 | 0.72 | 0.55675 |
Target: 5'- cGGUCGgcGCGGUGGGCGUGCCcgUGAAUg -3' miRNA: 3'- -CUAGC--UGCUACUCGUGCGGa-ACUUGu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 15742 | 0.7 | 0.637594 |
Target: 5'- cGcgCGGCGGUGAGCugGUC--GAGCu -3' miRNA: 3'- -CuaGCUGCUACUCGugCGGaaCUUGu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 4012 | 0.7 | 0.660808 |
Target: 5'- gGGUCGACGAgcuucuGCGCGCCgcGGAUg -3' miRNA: 3'- -CUAGCUGCUacu---CGUGCGGaaCUUGu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 38948 | 0.69 | 0.729325 |
Target: 5'- aGAUCGugGAuaacuuucaaccUGGGgACGCCgaGGACu -3' miRNA: 3'- -CUAGCugCU------------ACUCgUGCGGaaCUUGu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 10438 | 0.68 | 0.75144 |
Target: 5'- aGUCGACGuc-GGCACGCCgUUGuACGu -3' miRNA: 3'- cUAGCUGCuacUCGUGCGG-AACuUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 14916 | 0.67 | 0.804124 |
Target: 5'- uGUUGcuGCGGUGuGCACGCCcgcGAACGu -3' miRNA: 3'- cUAGC--UGCUACuCGUGCGGaa-CUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 34643 | 0.66 | 0.877426 |
Target: 5'- cGUCGACGA--GGCGCGCCg------ -3' miRNA: 3'- cUAGCUGCUacUCGUGCGGaacuugu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 4540 | 0.66 | 0.869158 |
Target: 5'- cGGUCGagGCGAUGAGCACcgaCgagGAACu -3' miRNA: 3'- -CUAGC--UGCUACUCGUGcg-Gaa-CUUGu -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 27759 | 0.66 | 0.869158 |
Target: 5'- --cCGAUGccGAGCGCGCCggcgagguaGAGCGc -3' miRNA: 3'- cuaGCUGCuaCUCGUGCGGaa-------CUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 24605 | 0.66 | 0.860616 |
Target: 5'- --gCGGCGAUGAucuugcggccGCACGCgUggucGAACAg -3' miRNA: 3'- cuaGCUGCUACU----------CGUGCGgAa---CUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 16500 | 0.67 | 0.823883 |
Target: 5'- uGGUCGGCGAUGucGCAgGCCgaucGCGu -3' miRNA: 3'- -CUAGCUGCUACu-CGUgCGGaacuUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 36216 | 0.67 | 0.823883 |
Target: 5'- -uUCGGCGucGAGCACGCUUUcGAGgCAc -3' miRNA: 3'- cuAGCUGCuaCUCGUGCGGAA-CUU-GU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 17375 | 0.67 | 0.804124 |
Target: 5'- -uUCGGCGA-GGGCuCGCUgUUGAACGc -3' miRNA: 3'- cuAGCUGCUaCUCGuGCGG-AACUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 29511 | 0.71 | 0.591189 |
Target: 5'- -cUCGACGgcGGGCGCGUUguaGAACAg -3' miRNA: 3'- cuAGCUGCuaCUCGUGCGGaa-CUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 13550 | 0.73 | 0.489893 |
Target: 5'- cGAUCGGCGAUGcGCugcCGCCc-GAGCAg -3' miRNA: 3'- -CUAGCUGCUACuCGu--GCGGaaCUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 29949 | 0.74 | 0.417012 |
Target: 5'- gGAUCGACGGUGucgaGCGCCgcGAACAc -3' miRNA: 3'- -CUAGCUGCUACucg-UGCGGaaCUUGU- -5' |
|||||||
28139 | 3' | -50.8 | NC_005887.1 | + | 16285 | 1.09 | 0.00201 |
Target: 5'- aGAUCGACGAUGAGCACGCCUUGAACAc -3' miRNA: 3'- -CUAGCUGCUACUCGUGCGGAACUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home