miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2814 3' -59.6 NC_001491.2 + 115876 0.66 0.705256
Target:  5'- gUGCCaUCCacgggcgcCCCAGGGGCaaGAGCgGCAAg -3'
miRNA:   3'- -AUGG-AGG--------GGGUUUCCGa-CUCGgCGUU- -5'
2814 3' -59.6 NC_001491.2 + 101716 0.66 0.685001
Target:  5'- aGCCUCCUgCGAgagGGGUUGgaGGCCGUg- -3'
miRNA:   3'- aUGGAGGGgGUU---UCCGAC--UCGGCGuu -5'
2814 3' -59.6 NC_001491.2 + 60144 0.66 0.65431
Target:  5'- cGCCUggCCUCGAGGGCccugaGAGCCGCu- -3'
miRNA:   3'- aUGGAg-GGGGUUUCCGa----CUCGGCGuu -5'
2814 3' -59.6 NC_001491.2 + 86328 0.67 0.644033
Target:  5'- cGCCcCCCCCGccAGGCUGGGaaGCc- -3'
miRNA:   3'- aUGGaGGGGGUu-UCCGACUCggCGuu -5'
2814 3' -59.6 NC_001491.2 + 148607 0.67 0.602908
Target:  5'- gGCCccgagUCCCCAucGGUUG-GCCGCGc -3'
miRNA:   3'- aUGGa----GGGGGUuuCCGACuCGGCGUu -5'
2814 3' -59.6 NC_001491.2 + 114840 0.68 0.579388
Target:  5'- cGCCUguacccggacucugCgCCCCuGAGGCUGuGCCGCu- -3'
miRNA:   3'- aUGGA--------------G-GGGGuUUCCGACuCGGCGuu -5'
2814 3' -59.6 NC_001491.2 + 115989 0.68 0.57125
Target:  5'- cGCCcgCUCCCGGGGGCaGcagcaccAGCCGCAGa -3'
miRNA:   3'- aUGGa-GGGGGUUUCCGaC-------UCGGCGUU- -5'
2814 3' -59.6 NC_001491.2 + 116730 0.68 0.552041
Target:  5'- -cCCUCgggCCCCGAcgcaAGGCUGccgcGGCCGCGg -3'
miRNA:   3'- auGGAG---GGGGUU----UCCGAC----UCGGCGUu -5'
2814 3' -59.6 NC_001491.2 + 140085 0.69 0.522132
Target:  5'- gGCCgCCCgCGGAGGCcuGGCCGCGc -3'
miRNA:   3'- aUGGaGGGgGUUUCCGacUCGGCGUu -5'
2814 3' -59.6 NC_001491.2 + 145443 0.69 0.473788
Target:  5'- gGCCUCCuCCCGGGcGGCUGGGa-GCGGg -3'
miRNA:   3'- aUGGAGG-GGGUUU-CCGACUCggCGUU- -5'
2814 3' -59.6 NC_001491.2 + 41160 0.73 0.314346
Target:  5'- cGCCU-CCUCGAAGGCgGAGCcCGCGAa -3'
miRNA:   3'- aUGGAgGGGGUUUCCGaCUCG-GCGUU- -5'
2814 3' -59.6 NC_001491.2 + 119395 0.73 0.300124
Target:  5'- gACCgggCCCCAuAGGCUaGAGCCGCu- -3'
miRNA:   3'- aUGGag-GGGGUuUCCGA-CUCGGCGuu -5'
2814 3' -59.6 NC_001491.2 + 70019 0.73 0.286404
Target:  5'- aGCUUCCCCgGAAGGUacgcGAGCCGCc- -3'
miRNA:   3'- aUGGAGGGGgUUUCCGa---CUCGGCGuu -5'
2814 3' -59.6 NC_001491.2 + 146962 0.74 0.272535
Target:  5'- gGCCUCCCCCAAcauccccccgaccAGGCUGGGUaUGCu- -3'
miRNA:   3'- aUGGAGGGGGUU-------------UCCGACUCG-GCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.