miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28140 5' -53.6 NC_005887.1 + 40013 0.7 0.493249
Target:  5'- cGUCGCgGugcgcaucauggcGCGGcUCGAGGCGGCCGg -3'
miRNA:   3'- uUAGCGgUu------------CGUCuAGCUCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 16161 0.7 0.496456
Target:  5'- --gCGCCGAGUGcgcgagcGAUCGAGGCGaACCu -3'
miRNA:   3'- uuaGCGGUUCGU-------CUAGCUCUGC-UGGc -5'
28140 5' -53.6 NC_005887.1 + 35472 0.69 0.519165
Target:  5'- cGUUGUCGAGCAGGUCGAcauucauccCGACCu -3'
miRNA:   3'- uUAGCGGUUCGUCUAGCUcu-------GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 15398 0.69 0.563465
Target:  5'- uGAUCGCgCGcgggcAGCGGAUCGucGACGACg- -3'
miRNA:   3'- -UUAGCG-GU-----UCGUCUAGCu-CUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 17672 0.68 0.57133
Target:  5'- -cUCGCCGcgcuuggcgacgucGGCAcGAuguUCGuGACGGCCGg -3'
miRNA:   3'- uuAGCGGU--------------UCGU-CU---AGCuCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 34778 0.67 0.654292
Target:  5'- cAUCGCCGcGCaccgcaAGcgCGAcGACGGCCGc -3'
miRNA:   3'- uUAGCGGUuCG------UCuaGCU-CUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 36364 0.67 0.653153
Target:  5'- --cCGCCGcGCAGAUCGgccaaccGGACGAgUCGa -3'
miRNA:   3'- uuaGCGGUuCGUCUAGC-------UCUGCU-GGC- -5'
28140 5' -53.6 NC_005887.1 + 1592 0.67 0.631499
Target:  5'- cGGUCGUCGacAGCAGGUCcGGGuacguguuccgcACGGCCGc -3'
miRNA:   3'- -UUAGCGGU--UCGUCUAG-CUC------------UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 329 0.68 0.620098
Target:  5'- --gCGCCAcgucuuucGGCaucAGGUCGAGGCG-CCGc -3'
miRNA:   3'- uuaGCGGU--------UCG---UCUAGCUCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 20522 0.68 0.605295
Target:  5'- cAUUGCCGAGCGuguuggacGAaucgaacaggcuguUCGAGACGugCGu -3'
miRNA:   3'- uUAGCGGUUCGU--------CU--------------AGCUCUGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 8533 0.68 0.59734
Target:  5'- cGUCGCCGAGCGGuugCGccGGGCGcUCGa -3'
miRNA:   3'- uUAGCGGUUCGUCua-GC--UCUGCuGGC- -5'
28140 5' -53.6 NC_005887.1 + 759 0.67 0.654292
Target:  5'- cGUCGgCGAGCAGcAUCGAcucGGCGAgCa -3'
miRNA:   3'- uUAGCgGUUCGUC-UAGCU---CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 4938 0.67 0.665661
Target:  5'- cAUCGUCGcgAGCGGAUCGAu-CGugCGc -3'
miRNA:   3'- uUAGCGGU--UCGUCUAGCUcuGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 21558 0.66 0.699518
Target:  5'- cGAUUGCCGgcGGCgaugcgagauAGGUCGAGAaaccCGACCc -3'
miRNA:   3'- -UUAGCGGU--UCG----------UCUAGCUCU----GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 973 0.66 0.71068
Target:  5'- gGGUCGCgAcGCGGAUCGAaGCcgaGGCCGc -3'
miRNA:   3'- -UUAGCGgUuCGUCUAGCUcUG---CUGGC- -5'
28140 5' -53.6 NC_005887.1 + 31341 0.66 0.732742
Target:  5'- -cUCGaCgAGGC-GAUCGAcGCGGCCGa -3'
miRNA:   3'- uuAGC-GgUUCGuCUAGCUcUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 17060 0.66 0.743617
Target:  5'- --gCGCguGGCGGAUCGGcACGuaGCCGu -3'
miRNA:   3'- uuaGCGguUCGUCUAGCUcUGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 7493 0.66 0.743617
Target:  5'- --aCGCCAgcccaaacgaGGCGGcggCGGGuGCGACCGu -3'
miRNA:   3'- uuaGCGGU----------UCGUCua-GCUC-UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 18224 0.66 0.743617
Target:  5'- --aUGCCGAGCAGcuUCGGcacgacgucGGCGGCCc -3'
miRNA:   3'- uuaGCGGUUCGUCu-AGCU---------CUGCUGGc -5'
28140 5' -53.6 NC_005887.1 + 26304 0.75 0.26465
Target:  5'- aGAUCGUCGAGCGGAUCG-GAccCGugCGc -3'
miRNA:   3'- -UUAGCGGUUCGUCUAGCuCU--GCugGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.