miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 14706 0.68 0.328801
Target:  5'- gGGCaGCACCGCGccgGCUGC-CgugagCGCGc -3'
miRNA:   3'- -CCG-CGUGGCGCa--CGACGuGaag--GCGC- -5'
28141 3' -59.4 NC_005887.1 + 23345 0.68 0.310182
Target:  5'- cGGCGCggGCUGCGgcaaccgccacgaGCUGCGcCUUuuGCGc -3'
miRNA:   3'- -CCGCG--UGGCGCa------------CGACGU-GAAggCGC- -5'
28141 3' -59.4 NC_005887.1 + 22988 0.68 0.344938
Target:  5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3'
miRNA:   3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 4215 0.68 0.344938
Target:  5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3'
miRNA:   3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5'
28141 3' -59.4 NC_005887.1 + 3248 0.68 0.344938
Target:  5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3'
miRNA:   3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2924 0.68 0.328801
Target:  5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3'
miRNA:   3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1487 0.68 0.328801
Target:  5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3'
miRNA:   3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 30501 0.68 0.313228
Target:  5'- uGCGCACCGCaaaaCUGCAUcagcCCGCGu -3'
miRNA:   3'- cCGCGUGGCGcac-GACGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5159 0.68 0.313228
Target:  5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3'
miRNA:   3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 32745 0.69 0.263157
Target:  5'- cGGCGC-UCGCGUGC-GCGCcggCgCGCGc -3'
miRNA:   3'- -CCGCGuGGCGCACGaCGUGaa-G-GCGC- -5'
28141 3' -59.4 NC_005887.1 + 16452 0.69 0.298221
Target:  5'- cGCGUGCgCGCGgGCaUGCGCUcgaCCGCGc -3'
miRNA:   3'- cCGCGUG-GCGCaCG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 42083 0.69 0.276765
Target:  5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3'
miRNA:   3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14555 0.69 0.298221
Target:  5'- --aGCACCGCG-GCggGCACgaUCUGCGc -3'
miRNA:   3'- ccgCGUGGCGCaCGa-CGUGa-AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1556 0.69 0.276765
Target:  5'- cGGcCGCGCCGCGcgaGCgccGCACgccgUCgGCGu -3'
miRNA:   3'- -CC-GCGUGGCGCa--CGa--CGUGa---AGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 35641 0.69 0.276765
Target:  5'- aGGCcaagGCCGUGUGCccgGCGCUcgCCGCa -3'
miRNA:   3'- -CCGcg--UGGCGCACGa--CGUGAa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 14029 0.69 0.269892
Target:  5'- aGGUGCACCGUGaccgGC-GCGCccgucuugUCCGUGa -3'
miRNA:   3'- -CCGCGUGGCGCa---CGaCGUGa-------AGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 27232 0.69 0.276071
Target:  5'- gGGCGCAUCGCGgcgcaacUGCaucGCGCgccggcCCGCGu -3'
miRNA:   3'- -CCGCGUGGCGC-------ACGa--CGUGaa----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5434 0.69 0.269892
Target:  5'- cGGCGCgaccacGCCGCccGCUgGCACUccugCCGCa -3'
miRNA:   3'- -CCGCG------UGGCGcaCGA-CGUGAa---GGCGc -5'
28141 3' -59.4 NC_005887.1 + 24956 0.69 0.263157
Target:  5'- cGCGgGCCGCcuUGC-GCGCggCCGCGa -3'
miRNA:   3'- cCGCgUGGCGc-ACGaCGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 41952 0.7 0.250098
Target:  5'- cGGCGUGCuCGCGUGgUGCG--UgCGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCACgACGUgaAgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.