Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28141 | 3' | -59.4 | NC_005887.1 | + | 42083 | 0.69 | 0.276765 |
Target: 5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3' miRNA: 3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 35641 | 0.69 | 0.276765 |
Target: 5'- aGGCcaagGCCGUGUGCccgGCGCUcgCCGCa -3' miRNA: 3'- -CCGcg--UGGCGCACGa--CGUGAa-GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14555 | 0.69 | 0.298221 |
Target: 5'- --aGCACCGCG-GCggGCACgaUCUGCGc -3' miRNA: 3'- ccgCGUGGCGCaCGa-CGUGa-AGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 16452 | 0.69 | 0.298221 |
Target: 5'- cGCGUGCgCGCGgGCaUGCGCUcgaCCGCGc -3' miRNA: 3'- cCGCGUG-GCGCaCG-ACGUGAa--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 407 | 0.68 | 0.305654 |
Target: 5'- cGCGCACaUGCGacgGCUcgcGCACUUCCuCGg -3' miRNA: 3'- cCGCGUG-GCGCa--CGA---CGUGAAGGcGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 23345 | 0.68 | 0.310182 |
Target: 5'- cGGCGCggGCUGCGgcaaccgccacgaGCUGCGcCUUuuGCGc -3' miRNA: 3'- -CCGCG--UGGCGCa------------CGACGU-GAAggCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 5159 | 0.68 | 0.313228 |
Target: 5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3' miRNA: 3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14081 | 0.68 | 0.313228 |
Target: 5'- cGGCGCGCCgGCG-GUUGCGgaggCgCGCGg -3' miRNA: 3'- -CCGCGUGG-CGCaCGACGUgaa-G-GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 30501 | 0.68 | 0.313228 |
Target: 5'- uGCGCACCGCaaaaCUGCAUcagcCCGCGu -3' miRNA: 3'- cCGCGUGGCGcac-GACGUGaa--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 3997 | 0.68 | 0.313228 |
Target: 5'- uGCGCGCCGCGgaUGUUGguCUU-CGCc -3' miRNA: 3'- cCGCGUGGCGC--ACGACguGAAgGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 15894 | 0.68 | 0.320944 |
Target: 5'- -uCGCGCCGCGcaagcGCUGCAC--CUGCGc -3' miRNA: 3'- ccGCGUGGCGCa----CGACGUGaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 37521 | 0.68 | 0.32407 |
Target: 5'- cGGCGCACUGCaaaccgcgcaggcaaGcGCcGCGCUccacUCCGCa -3' miRNA: 3'- -CCGCGUGGCG---------------CaCGaCGUGA----AGGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 1487 | 0.68 | 0.328801 |
Target: 5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3' miRNA: 3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 40979 | 0.68 | 0.328801 |
Target: 5'- cGGUGCGCgCGCG-GUaGCcCUUCgGCGg -3' miRNA: 3'- -CCGCGUG-GCGCaCGaCGuGAAGgCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14706 | 0.68 | 0.328801 |
Target: 5'- gGGCaGCACCGCGccgGCUGC-CgugagCGCGc -3' miRNA: 3'- -CCG-CGUGGCGCa--CGACGuGaag--GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 2924 | 0.68 | 0.328801 |
Target: 5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3' miRNA: 3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 41620 | 0.68 | 0.344938 |
Target: 5'- cGGCGCGgcCCGUGaggaucUGCUGCG--UCUGCGc -3' miRNA: 3'- -CCGCGU--GGCGC------ACGACGUgaAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 22988 | 0.68 | 0.344938 |
Target: 5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3' miRNA: 3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 4215 | 0.68 | 0.344938 |
Target: 5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3' miRNA: 3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 3248 | 0.68 | 0.344938 |
Target: 5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3' miRNA: 3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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