Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28141 | 3' | -59.4 | NC_005887.1 | + | 40580 | 0.7 | 0.256559 |
Target: 5'- cGCGCGCCGCGUGgUGgaugccgaaCACgacgUCGCGc -3' miRNA: 3'- cCGCGUGGCGCACgAC---------GUGaa--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 15687 | 0.7 | 0.256559 |
Target: 5'- cGGCGagcccgGCCGCcUGCUGCGCgacgcCCGUGc -3' miRNA: 3'- -CCGCg-----UGGCGcACGACGUGaa---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 41952 | 0.7 | 0.250098 |
Target: 5'- cGGCGUGCuCGCGUGgUGCG--UgCGCGg -3' miRNA: 3'- -CCGCGUG-GCGCACgACGUgaAgGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 13625 | 0.7 | 0.250098 |
Target: 5'- cGGCGCGCgGCG-GCcGCACUcagCCGa- -3' miRNA: 3'- -CCGCGUGgCGCaCGaCGUGAa--GGCgc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 12198 | 0.7 | 0.249459 |
Target: 5'- uGGCGCGCgacgGCGgccUGCUcguccugGCGCUUCUGCGc -3' miRNA: 3'- -CCGCGUGg---CGC---ACGA-------CGUGAAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 8702 | 0.7 | 0.243771 |
Target: 5'- cGGCGaucCGCCGCG-GCgguaaGCGCUUCguCGCGg -3' miRNA: 3'- -CCGC---GUGGCGCaCGa----CGUGAAG--GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 368 | 0.7 | 0.243771 |
Target: 5'- cGCGCACCGCGgccucGCUgaucacgccacGCAgUUcCCGCGc -3' miRNA: 3'- cCGCGUGGCGCa----CGA-----------CGUgAA-GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 2094 | 0.7 | 0.243771 |
Target: 5'- cGGUGCACCcggacuauGCGgauucGCUGCACUgcaagCCGUu -3' miRNA: 3'- -CCGCGUGG--------CGCa----CGACGUGAa----GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 8915 | 0.7 | 0.237578 |
Target: 5'- gGGCGCGCCgGCGUucacaaGCUGC----CCGCGa -3' miRNA: 3'- -CCGCGUGG-CGCA------CGACGugaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 22415 | 0.7 | 0.231517 |
Target: 5'- cGCGaACCucguCGUGCUGCugUUCUGCa -3' miRNA: 3'- cCGCgUGGc---GCACGACGugAAGGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 35333 | 0.7 | 0.225587 |
Target: 5'- cGCGCGCCGCGgcgGCcgGCcacgaGCUUCaCGCc -3' miRNA: 3'- cCGCGUGGCGCa--CGa-CG-----UGAAG-GCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 11609 | 0.7 | 0.225587 |
Target: 5'- cGCGCGCUGCGcgccgagcUGCUGaucaGCUUgaCCGCGu -3' miRNA: 3'- cCGCGUGGCGC--------ACGACg---UGAA--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 16937 | 0.7 | 0.225587 |
Target: 5'- gGGCGCGauGCGUGa-GCGCUUcaaCCGCGc -3' miRNA: 3'- -CCGCGUggCGCACgaCGUGAA---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14877 | 0.7 | 0.225587 |
Target: 5'- cGCGCACCGCGcgGCagaaUGCGCcagCUGCu -3' miRNA: 3'- cCGCGUGGCGCa-CG----ACGUGaa-GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 40190 | 0.7 | 0.225587 |
Target: 5'- cGCGCACCGCacGCUGUagGCgUCCuGCGg -3' miRNA: 3'- cCGCGUGGCGcaCGACG--UGaAGG-CGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14943 | 0.71 | 0.219786 |
Target: 5'- uGGCGCauucuGCCGCGcggUGC-GCGCUguugCUGCGg -3' miRNA: 3'- -CCGCG-----UGGCGC---ACGaCGUGAa---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 8156 | 0.71 | 0.219786 |
Target: 5'- cGGCGaGCUGCGcGC-GCGCUUUCGUGa -3' miRNA: 3'- -CCGCgUGGCGCaCGaCGUGAAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 32668 | 0.71 | 0.214113 |
Target: 5'- cGGUGUcgCGCGUGC-GCGCUUCgGCa -3' miRNA: 3'- -CCGCGugGCGCACGaCGUGAAGgCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 9912 | 0.71 | 0.208566 |
Target: 5'- cGGCGCGCgGCGUucagguugGCcGCGCUgaccggCUGCGa -3' miRNA: 3'- -CCGCGUGgCGCA--------CGaCGUGAa-----GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 40766 | 0.71 | 0.197844 |
Target: 5'- uGGCGCGCCGCGcGCcGC-CgagCCgGCGg -3' miRNA: 3'- -CCGCGUGGCGCaCGaCGuGaa-GG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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