miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 14877 0.7 0.225587
Target:  5'- cGCGCACCGCGcgGCagaaUGCGCcagCUGCu -3'
miRNA:   3'- cCGCGUGGCGCa-CG----ACGUGaa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 14943 0.71 0.219786
Target:  5'- uGGCGCauucuGCCGCGcggUGC-GCGCUguugCUGCGg -3'
miRNA:   3'- -CCGCG-----UGGCGC---ACGaCGUGAa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15257 0.73 0.155371
Target:  5'- aGGCa-GCCGCaGUGCUGCGCggcgagcgUCCGCc -3'
miRNA:   3'- -CCGcgUGGCG-CACGACGUGa-------AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 15317 0.67 0.38772
Target:  5'- cGCaGCACUGCG-GCUGCcuGCUUcgggCCGCc -3'
miRNA:   3'- cCG-CGUGGCGCaCGACG--UGAA----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 15687 0.7 0.256559
Target:  5'- cGGCGagcccgGCCGCcUGCUGCGCgacgcCCGUGc -3'
miRNA:   3'- -CCGCg-----UGGCGcACGACGUGaa---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15824 0.66 0.41501
Target:  5'- aGGCGCA--G-GUGCaGCGCUUgCGCGg -3'
miRNA:   3'- -CCGCGUggCgCACGaCGUGAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15894 0.68 0.320944
Target:  5'- -uCGCGCCGCGcaagcGCUGCAC--CUGCGc -3'
miRNA:   3'- ccGCGUGGCGCa----CGACGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 16452 0.69 0.298221
Target:  5'- cGCGUGCgCGCGgGCaUGCGCUcgaCCGCGc -3'
miRNA:   3'- cCGCGUG-GCGCaCG-ACGUGAa--GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 16937 0.7 0.225587
Target:  5'- gGGCGCGauGCGUGa-GCGCUUcaaCCGCGc -3'
miRNA:   3'- -CCGCGUggCGCACgaCGUGAA---GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17117 0.66 0.405782
Target:  5'- cGGCGUccGCCcaaGCGUgccGCUGCGCaUCCGa- -3'
miRNA:   3'- -CCGCG--UGG---CGCA---CGACGUGaAGGCgc -5'
28141 3' -59.4 NC_005887.1 + 17260 0.74 0.135505
Target:  5'- cGGCGCaacauuGCCGCGUGCgGCcGCgUUCGCGc -3'
miRNA:   3'- -CCGCG------UGGCGCACGaCG-UGaAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17316 1.11 0.000203
Target:  5'- cGGCGCACCGCGUGCUGCACUUCCGCGa -3'
miRNA:   3'- -CCGCGUGGCGCACGACGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17584 0.67 0.396685
Target:  5'- uGC-CGCCcucgaGCGUGC-GCAUUUCCGUGc -3'
miRNA:   3'- cCGcGUGG-----CGCACGaCGUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 17692 0.66 0.433845
Target:  5'- cGGCGCugACCGuCGUGC-GCAgcguuuccauCUUgCGCGc -3'
miRNA:   3'- -CCGCG--UGGC-GCACGaCGU----------GAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 18334 0.72 0.182664
Target:  5'- gGGCGCAUCgGCGacaUGCgacguucggGCgACUUCCGCGu -3'
miRNA:   3'- -CCGCGUGG-CGC---ACGa--------CG-UGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 21265 0.67 0.370194
Target:  5'- gGGgGCACCGCGgcgGCggcguaUGCGCUgcuggcgUCGCc -3'
miRNA:   3'- -CCgCGUGGCGCa--CG------ACGUGAa------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 22415 0.7 0.231517
Target:  5'- cGCGaACCucguCGUGCUGCugUUCUGCa -3'
miRNA:   3'- cCGCgUGGc---GCACGACGugAAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 22874 0.66 0.405782
Target:  5'- cGGaUGCGCCGCGUaGCUcGUgaacaacaGCggCCGCGc -3'
miRNA:   3'- -CC-GCGUGGCGCA-CGA-CG--------UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 22988 0.68 0.344938
Target:  5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3'
miRNA:   3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 23345 0.68 0.310182
Target:  5'- cGGCGCggGCUGCGgcaaccgccacgaGCUGCGcCUUuuGCGc -3'
miRNA:   3'- -CCGCG--UGGCGCa------------CGACGU-GAAggCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.