miRNA display CGI


Results 81 - 93 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 34344 0.67 0.396685
Target:  5'- -cCGCACgGCGacgGCaUGCGCaagCCGCGa -3'
miRNA:   3'- ccGCGUGgCGCa--CG-ACGUGaa-GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 42079 0.67 0.396685
Target:  5'- cGCGCGCCGCG-GC-GaCACUcgacgugggCCGCa -3'
miRNA:   3'- cCGCGUGGCGCaCGaC-GUGAa--------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 15894 0.68 0.320944
Target:  5'- -uCGCGCCGCGcaagcGCUGCAC--CUGCGc -3'
miRNA:   3'- ccGCGUGGCGCa----CGACGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37521 0.68 0.32407
Target:  5'- cGGCGCACUGCaaaccgcgcaggcaaGcGCcGCGCUccacUCCGCa -3'
miRNA:   3'- -CCGCGUGGCG---------------CaCGaCGUGA----AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 14706 0.68 0.328801
Target:  5'- gGGCaGCACCGCGccgGCUGC-CgugagCGCGc -3'
miRNA:   3'- -CCG-CGUGGCGCa--CGACGuGaag--GCGC- -5'
28141 3' -59.4 NC_005887.1 + 40979 0.68 0.328801
Target:  5'- cGGUGCGCgCGCG-GUaGCcCUUCgGCGg -3'
miRNA:   3'- -CCGCGUG-GCGCaCGaCGuGAAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 37400 0.67 0.361636
Target:  5'- cGGCG-ACCGaugccaGUGCcgGCGCUgCUGCGa -3'
miRNA:   3'- -CCGCgUGGCg-----CACGa-CGUGAaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 13681 0.67 0.361636
Target:  5'- cGGC-CGCCGCGcGCcGCGCUgCCaGCa -3'
miRNA:   3'- -CCGcGUGGCGCaCGaCGUGAaGG-CGc -5'
28141 3' -59.4 NC_005887.1 + 5556 0.67 0.361636
Target:  5'- cGGUGCugcgGCCG-GUGCUGCGCcaucggcCUGCGu -3'
miRNA:   3'- -CCGCG----UGGCgCACGACGUGaa-----GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 5361 0.67 0.378889
Target:  5'- uGGCGUagaacuucGCCGCGcGCUGCucggGCgaCUGCGu -3'
miRNA:   3'- -CCGCG--------UGGCGCaCGACG----UGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 4682 0.67 0.378889
Target:  5'- cGGCcaccgGCGCCGCGgcgagcaucUGUUGCAUcUgCGCGg -3'
miRNA:   3'- -CCG-----CGUGGCGC---------ACGACGUGaAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15317 0.67 0.38772
Target:  5'- cGCaGCACUGCG-GCUGCcuGCUUcgggCCGCc -3'
miRNA:   3'- cCG-CGUGGCGCaCGACG--UGAA----GGCGc -5'
28141 3' -59.4 NC_005887.1 + 5486 0.66 0.443447
Target:  5'- uGGuCGCGCCG-GUcGCUGCGgcgCCGCc -3'
miRNA:   3'- -CC-GCGUGGCgCA-CGACGUgaaGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.