miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28141 3' -59.4 NC_005887.1 + 22415 0.7 0.231517
Target:  5'- cGCGaACCucguCGUGCUGCugUUCUGCa -3'
miRNA:   3'- cCGCgUGGc---GCACGACGugAAGGCGc -5'
28141 3' -59.4 NC_005887.1 + 14877 0.7 0.225587
Target:  5'- cGCGCACCGCGcgGCagaaUGCGCcagCUGCu -3'
miRNA:   3'- cCGCGUGGCGCa-CG----ACGUGaa-GGCGc -5'
28141 3' -59.4 NC_005887.1 + 40766 0.71 0.197844
Target:  5'- uGGCGCGCCGCGcGCcGC-CgagCCgGCGg -3'
miRNA:   3'- -CCGCGUGGCGCaCGaCGuGaa-GG-CGC- -5'
28141 3' -59.4 NC_005887.1 + 18334 0.72 0.182664
Target:  5'- gGGCGCAUCgGCGacaUGCgacguucggGCgACUUCCGCGu -3'
miRNA:   3'- -CCGCGUGG-CGC---ACGa--------CG-UGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 15257 0.73 0.155371
Target:  5'- aGGCa-GCCGCaGUGCUGCGCggcgagcgUCCGCc -3'
miRNA:   3'- -CCGcgUGGCG-CACGACGUGa-------AGGCGc -5'
28141 3' -59.4 NC_005887.1 + 5159 0.68 0.313228
Target:  5'- cGGCGCGCCGCugaUGCUGauggcaCGCGu -3'
miRNA:   3'- -CCGCGUGGCGc--ACGACgugaagGCGC- -5'
28141 3' -59.4 NC_005887.1 + 1487 0.68 0.328801
Target:  5'- cGGCGUGCgGCGcucGCgcgGCGCggCCGUGc -3'
miRNA:   3'- -CCGCGUGgCGCa--CGa--CGUGaaGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 37400 0.66 0.433846
Target:  5'- uGGCGCugCGCGgucgcgacUGcCUGCACgccaggUGCGg -3'
miRNA:   3'- -CCGCGugGCGC--------AC-GACGUGaag---GCGC- -5'
28141 3' -59.4 NC_005887.1 + 3368 0.66 0.433846
Target:  5'- aGGCGUACCuGCagggagugGUGC-GCACgcuguucgCCGCGc -3'
miRNA:   3'- -CCGCGUGG-CG--------CACGaCGUGaa------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 11055 0.66 0.424365
Target:  5'- aGGCGUGgacacugauuuCCGCGccGCUGCucaaacgaUUCCGCGu -3'
miRNA:   3'- -CCGCGU-----------GGCGCa-CGACGug------AAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 33641 0.66 0.41501
Target:  5'- -cCGUAgCGCGcGCUGCGC-UCgGCGa -3'
miRNA:   3'- ccGCGUgGCGCaCGACGUGaAGgCGC- -5'
28141 3' -59.4 NC_005887.1 + 15824 0.66 0.41501
Target:  5'- aGGCGCA--G-GUGCaGCGCUUgCGCGg -3'
miRNA:   3'- -CCGCGUggCgCACGaCGUGAAgGCGC- -5'
28141 3' -59.4 NC_005887.1 + 14221 0.66 0.41501
Target:  5'- gGGCgGCGCCGCGcUGUucgGCGCggcaUCCGa- -3'
miRNA:   3'- -CCG-CGUGGCGC-ACGa--CGUGa---AGGCgc -5'
28141 3' -59.4 NC_005887.1 + 27082 0.66 0.41501
Target:  5'- --gGUGCCGCGcuUGCUGCGCUgguucgacaCGCGc -3'
miRNA:   3'- ccgCGUGGCGC--ACGACGUGAag-------GCGC- -5'
28141 3' -59.4 NC_005887.1 + 1234 0.67 0.396685
Target:  5'- gGGCGCugCGCGgcGCUcaGCACgcgaaaacgUCGCa -3'
miRNA:   3'- -CCGCGugGCGCa-CGA--CGUGaa-------GGCGc -5'
28141 3' -59.4 NC_005887.1 + 41620 0.68 0.344938
Target:  5'- cGGCGCGgcCCGUGaggaucUGCUGCG--UCUGCGc -3'
miRNA:   3'- -CCGCGU--GGCGC------ACGACGUgaAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 22988 0.68 0.344938
Target:  5'- uGGCGCGuuGCc-GCUGaucgacgccgguCGCUUCUGCGa -3'
miRNA:   3'- -CCGCGUggCGcaCGAC------------GUGAAGGCGC- -5'
28141 3' -59.4 NC_005887.1 + 4215 0.68 0.344938
Target:  5'- cGCGCGCaggagaaagGCGUGCUGCucgcgccgacGCUcggCCGCa -3'
miRNA:   3'- cCGCGUGg--------CGCACGACG----------UGAa--GGCGc -5'
28141 3' -59.4 NC_005887.1 + 3248 0.68 0.344938
Target:  5'- -cCGCGCCGCucgcGCUGCGCaacuucgucgCCGCGa -3'
miRNA:   3'- ccGCGUGGCGca--CGACGUGaa--------GGCGC- -5'
28141 3' -59.4 NC_005887.1 + 2924 0.68 0.328801
Target:  5'- cGC-CGCCGCcaaGCUGCGCaagcgCCGCGg -3'
miRNA:   3'- cCGcGUGGCGca-CGACGUGaa---GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.